PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn012881

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 224aa MW: 24240.4 Da PI: 7.7274

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn012881	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.5	1.3e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p + p++q +++ +v+k+FG++ ++++l+++p ++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++++ Achn012881 2 SCNGCRVLRKGCSENCILRPSLqwidsPEAQGHATVFVAKFFGRAGLMSFLSSVPLNQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQAAVQT 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l+ Achn012881 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.24	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PSLQWIDSPE AQGHATVFVA KFFGRAGLMS FLSSVPLNQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQAAVQT VLRGGALRPI PEFHAGGSLS 120 PPDLDEASEA EVAFPDTFNL HQSPSPTSKA PKRRRVNERA ENRLADLGLS LTPCSAIEET 180 SYKHSAEKRR DGTPSMNSDE SVTTTCFESG RFVSEPKLVN FFG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	155	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028075140.1	1e-110	LOB domain-containing protein 37-like
Swissprot	Q9SN23	2e-79	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2R6R5E5	1e-163	A0A2R6R5E5_ACTCH; LOB domain-containing protein
STRING	VIT_07s0129g00330.t01	6e-93	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-81	LOB domain-containing protein 38