PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn013161
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 565aa    MW: 62838.4 Da    PI: 8.6203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn013161genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-08152192954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Achn013161 152 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYLKFL 192
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.485143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13145202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14147206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5153192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-6166197No hitNo description
PROSITE profilePS5010214.419201277IPR000504RNA recognition motif domain
SMARTSM003601.9E-17202273IPR000504RNA recognition motif domain
SuperFamilySSF549282.15E-22205283IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.6E-21205282IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000764.3E-13207270IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3305.6E-20285366IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549289.67E-21285367IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.647289365IPR000504RNA recognition motif domain
SMARTSM003606.1E-19290361IPR000504RNA recognition motif domain
PfamPF000766.0E-12291348IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3303.5E-19428510IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.9E-20429529IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010216.108429505IPR000504RNA recognition motif domain
CDDcd123222.19E-30429504No hitNo description
SMARTSM003601.4E-16430501IPR000504RNA recognition motif domain
PfamPF000761.5E-13431484IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MDIDLMKSPA PDHVEMMTMM MHLDKLPELF GFSSGSAATV EATAPPIFHS PSLNSTTLIN  60
PPSSAPFLGT PFQDLPMNIP QAHHNVFTPK FRTNQIQLSS ETSLRKRSSM EAMREMIFHM  120
AVMQPINIDP DSVKPSKRRN VKISKDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS  180
MLDEAIHYLK FLKKQVQALE QAAGVLGIPW DVDTDGLKDY MSKFGELEDC IVMKERSSGR  240
SRGFGYVTFA SVEDAKNVLS NEHFLGNRVL EVKVATPKEE MRAPSKKVTR IFVARIPPSA  300
TEAAFRSYFE QYGEITDLYM PKDPSTKGHR GIGFITFASA ESVDNLMDES HELGGSTVVV  360
DRATPKAIYN TTCLEEDFRP INRVPQSGYG AYNAYITAAT RYAALGAPTL YDHPSSIYGR  420
GESARGMGKK IFVGRLPQEA TTDDLRQYFG RFGRILDVYI PKDPKRTGHR GFGFVTFAED  480
GVADRVSRRS HEICGQQVAI DSATPVDDAG PSGNIMMDNV EPYGGYGGPM RTYGRMYGSM  540
DFDNWSYGMG GGRTSRADFR YRPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjk_A5e-252075225166NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 4
2km8_C5e-252075225166Nuclear polyadenylated RNA-binding protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056430.10.0heterogeneous nuclear ribonucleoprotein 1
RefseqXP_028056431.10.0heterogeneous nuclear ribonucleoprotein 1
TrEMBLA0A2R6R5J70.0A0A2R6R5J7_ACTCH; RNA recognition motif domain protein
STRINGVIT_07s0031g00600.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-37bHLH family protein