PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn013391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 208aa    MW: 23282.2 Da    PI: 9.6942
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn013391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161560147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++ Ed  l ++v q+G+ +W++I++ ++ gR++k+c++rw++ 
       Achn013391 15 RGSWSPAEDATLMRLVDQHGPCNWAAISNGIQ-GRSGKSCRLRWLNQ 60
                     89******************************.***********996 PP
2Myb_DNA-binding53.26.7e-1768111247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++++ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ 
       Achn013391  68 NPFSPAEDAIILKAHEVYGNR-WATIARQLP-GRTDNAIKNHWNST 111
                      689******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4811061IPR017930Myb domain
SuperFamilySSF466893.63E-2913108IPR009057Homeodomain-like
SMARTSM007171.9E-121463IPR001005SANT/Myb domain
PfamPF002498.7E-171560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221668IPR009057Homeodomain-like
CDDcd001671.32E-111759No hitNo description
PROSITE profilePS5129423.27162116IPR017930Myb domain
SMARTSM007175.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1468111IPR001005SANT/Myb domain
CDDcd001678.22E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2269115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEEIPVAESG GDRVRGSWSP AEDATLMRLV DQHGPCNWAA ISNGIQGRSG KSCRLRWLNQ  60
LSPAVEHNPF SPAEDAIILK AHEVYGNRWA TIARQLPGRT DNAIKNHWNS TLSRRCKAES  120
NSANSVTTES DSGAKRRRFG ENAEEEGPKT SLTLTLSPPG ERVGLRREEV RIKRDDERLM  180
NVIRRMIAEE VRRYIDRVLV AEKIKSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-34121164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091194.11e-81transcription factor MYB77-like
SwissprotQ9SN121e-47MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A2R6PLL01e-147A0A2R6PLL0_ACTCH; Transcription factor like
STRINGXP_010253806.13e-73(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128831620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-50myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]