PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn013921
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 247aa    MW: 27814.1 Da    PI: 9.6649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn013921genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.76.4e-20187242354
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST....T---EEEEEE-SSSTTEEEEEEES CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa....gCpvkkkversaedpkvveitYeg 54 
                 D +nWrKYG+K++k s++pr+YY+C+s+     C++kk ve+s + p  + + Y+g
  Achn013921 187 DPWNWRKYGRKPIKASPYPRNYYKCSSEginkYCQAKKYVEKSPSHPGKFMVSYSG 242
                 89************************9988889*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-18181242IPR003657WRKY domain
SMARTSM007741.9E-14185245IPR003657WRKY domain
PfamPF031062.2E-15187242IPR003657WRKY domain
PROSITE profilePS5081120.725187246IPR003657WRKY domain
SuperFamilySSF1182904.58E-17187242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVPPTSLAFE QKVNHHFDNT SYGGTKRNNG FEELNEVYKT FFAYKKTTHP NNHPKEPPQP  60
QPQQPINPST NSKSFASLLG GFNDHQQEPP PKSHSPPINP NTKTTHFISE TLIPKPQCIN  120
PTIVLAPSTP IFGDSSSKSH PKEEEEEKNK NPNPNRLDQC GCNHRKRSER KAVVLVEVEA  180
GDLAEVDPWN WRKYGRKPIK ASPYPRNYYK CSSEGINKYC QAKKYVEKSP SHPGKFMVSY  240
SGSSVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-17WRKY DNA-binding protein 27