PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn014031

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 359aa MW: 39903.9 Da PI: 8.7821

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn014031	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.4	3.9e-55	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL +k+++ ++++ +++++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++e Achn014031 14 LPPGFRFHPTDEELITYYLINKISDANFTA-RAVTDVDLNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvTSE 111 79***********************999.88***********99999************************************998999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfy+grap+gekt+Wvmheyr+ Achn014031 112 LVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 141 9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-64	7	163	IPR003441	NAC domain
PROSITE profile	PS51005	61.097	14	163	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MQGEEGVSMK EEKLPPGFRF HPTDEELITY YLINKISDAN FTARAVTDVD LNKSEPWDLP 60 GKAKMGEKEW YFFSLRDRKY PTGVRTNRAT NTGYWKTTGK DKEIFNSVTS ELVGMKKTLV 120 FYRGRAPRGE KTNWVMHEYR IHSKSAFRTA KQDEWVVCRV FQKSAGGKKY PSNHSSSRAP 180 LLNPYSLEIG PSATMHYSQM LQAVEACQFP SLGRNHMMMS NEMAEHMSSR VLRSGTCNSS 240 TSLVNFPIQP QLVNYPPEEA AAAAGFFTIS GLNLNLGGGG GATSSGFRSP PPPPPPQVVM 300 NQQDHHVSSS MFSGTLASEA VYGTAEATTN NANHAANNNR FMTMNHCLEL DNYWPAPY*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MQGEEGVSMK EEKLPPGFRF HPTDEELITY YLINKISDAN FTARAVTDVD LNKSEPWDLP  60
GKAKMGEKEW YFFSLRDRKY PTGVRTNRAT NTGYWKTTGK DKEIFNSVTS ELVGMKKTLV  120
FYRGRAPRGE KTNWVMHEYR IHSKSAFRTA KQDEWVVCRV FQKSAGGKKY PSNHSSSRAP  180
LLNPYSLEIG PSATMHYSQM LQAVEACQFP SLGRNHMMMS NEMAEHMSSR VLRSGTCNSS  240
TSLVNFPIQP QLVNYPPEEA AAAAGFFTIS GLNLNLGGGG GATSSGFRSP PPPPPPQVVM  300
NQQDHHVSSS MFSGTLASEA VYGTAEATTN NANHAANNNR FMTMNHCLEL DNYWPAPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	1	169	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-56	1	169	7	174	NAC domain-containing protein 19
3swm_B	4e-56	1	169	7	174	NAC domain-containing protein 19
3swm_C	4e-56	1	169	7	174	NAC domain-containing protein 19
3swm_D	4e-56	1	169	7	174	NAC domain-containing protein 19
3swp_A	4e-56	1	169	7	174	NAC domain-containing protein 19
3swp_B	4e-56	1	169	7	174	NAC domain-containing protein 19
3swp_C	4e-56	1	169	7	174	NAC domain-containing protein 19
3swp_D	4e-56	1	169	7	174	NAC domain-containing protein 19
4dul_A	4e-56	1	169	4	171	NAC domain-containing protein 19
4dul_B	4e-56	1	169	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028081498.1	1e-160	protein CUP-SHAPED COTYLEDON 1 isoform X1
Swissprot	Q9FLJ2	5e-80	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2R6Q2F5	0.0	A0A2R6Q2F5_ACTCH; NAC domain-containing protein
STRING	XP_002527980.1	1e-154	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-106	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]