PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn015021
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 186aa    MW: 20442.7 Da    PI: 5.07
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn015021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-073984346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+   +l+ +a + ++ +   +W   ar +g g+t +++k ++ +
       Achn015021 39 TWTPKQNKLFENALAVYPQDtpdRWQNLARAVG-GKTVEEVKGHYEM 84
                     7********************************.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0663590IPR017884SANT domain
SMARTSM007172.5E-63688IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-113894IPR009057Homeodomain-like
CDDcd001674.27E-63986No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDKSVKADFV RSNSQHKTVQ DFLLISTSNI CIEMGSNSTW TPKQNKLFEN ALAVYPQDTP  60
DRWQNLARAV GGKTVEEVKG HYEMLVEDVN HIESGQVPLP TYKPAGRSIK GYQFIDEEER  120
GEFYPTCDKW YQSRPGLLSA SHQAPPSGGV GRVTGRDEGV TSLGGEVCHV GTNPTSDREG  180
EVLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-2935110681RADIALIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-32RAD-like 6