PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn015191
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 731aa    MW: 82297.4 Da    PI: 5.6112
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn015191genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07140160425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 + C ff++ G+C  GdrC+F H
  Achn015191 140 VACIFFQK-GICLKGDRCPFLH 160
                 68******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.84075IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.50278104IPR000571Zinc finger, CCCH-type
SMARTSM003560.7480103IPR000571Zinc finger, CCCH-type
PfamPF146080.002283102No hitNo description
Gene3DG3DSA:4.10.1000.108.4E-4135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5137161IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5137162IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4140161IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MVGGTQPLQK QQQQQQQQQQ QLQPQTATTA PTSAEEEALK RNTDCVYFLA SPLTCKKVRF  60
SLSLYGAECE YRHSDIARVN PRDCWFWLNG SCLNPKCGFR HPPLDGLLGT QVSTPVGSSL  120
PPSQSAAVTS APHNSGKQSV ACIFFQKGIC LKGDRCPFLH APSTANKVPQ RAAAATVSEA  180
ILKNAFGGLE KCSQEQKVIS VINSAQVPQA NIPNSADLLS QAKPQAEVET APPENGVAIE  240
RYLPPPSDLD DQPPSYRPTN VPPATNGNPM SRSNRLQQVH VPDDHDDIMN SREPSPGFDV  300
LVDDELRESE YYQNEEHYGR SRSHERRNLN SMNDYDIGHS VDYDSMVDVD RDAYRDPRGY  360
DLYERMQEQY SREKHRASTE RMLGGSSHLE RRRHPRPESP DQIVESDLRH HLSNHRRVNG  420
LRSVISYDCA HDNYAEDRSY RGPSRRDAHH LPPNDSSVSD RFRGRIKLPG RSSSPLNGSD  480
LHPEREMDRG RNWVRLSPGR PQVSIHQGRL RDRIKGRVQD DLRNEGRGFR GLLMRDTASD  540
NNPNFAGPKS LAELKGGKNA ESKEHQMKDR QSFSLGKRKY AENHQQSESD FSFEGPKPLS  600
EILKRKKGAE TAVPESGLSY GNKEDINQKE ETKYQDNISL HRNKEETKST VGLPPLEHNA  660
SELETEEGMI VEEAVEDHKP DQRDGESDYE HIEGEDYNLE EAENEEAEEE YLDDDDDGDD  720
FAKKIGVMFS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028110730.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A2R6PGL10.0A0A2R6PGL1_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_01s0010g01770.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633