PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn015341
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 584aa    MW: 63842.7 Da    PI: 7.8543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn015341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.5e-30234291260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk  ers+ d+ ++ei+Y+g+H+h+k
  Achn015341 234 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKIFERSH-DGPITEIVYKGTHDHPK 291
                 8****************************************.***************85 PP
2WRKY106.21.7e-33400458159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Achn015341 400 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 458
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.756228292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-26228292IPR003657WRKY domain
SuperFamilySSF1182902.35E-24231292IPR003657WRKY domain
SMARTSM007742.0E-33233291IPR003657WRKY domain
PfamPF031061.0E-23234290IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37385460IPR003657WRKY domain
SuperFamilySSF1182902.35E-29392460IPR003657WRKY domain
PROSITE profilePS5081138.825395460IPR003657WRKY domain
SMARTSM007743.1E-39400459IPR003657WRKY domain
PfamPF031063.5E-26401458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDDNRHSRSS ELDQARDANS DSGSGAGLSS ARYKLLSPAK LPISRSPCIT IPPGLSPTSF  60
LESPVLLSNM KAEPSPTTGS FFKPQLMHSS GGNPGSSLAA NCSYSNIVDE RKTECFEFRP  120
PHSRSDSVSG LSAMAPMNST GMNYQRSEPF EQVQAQYQSK SFSSLPYVKS EMASSSKELN  180
LHAPVQMFPS RAIVPTSVNS DESNQVMSLS TGVQTSQADH KDAGASITAE RSSDDGYNWR  240
KYGQKLVKGC EFPRSYYKCT HPNCEVKKIF ERSHDGPITE IVYKGTHDHP KPQPSRRFTA  300
GAIMSIQERS DKVSSLTAQE DKSTINAQLS HNIEPNGTSE LSPRVTNDDV EGADHDDGDE  360
DDSFSKRRRV DGVSIDVTQV VKPIREPRVV VQTVSEVDIL DDGYRWRKYG QKVVRGNPNP  420
RSYYKCTNAG CPVRKHVERA SHDPKAVITT YEGKHNHDVP TAKARAHDMA GPATANGTLR  480
VKSEESDSIS LDLGVGISSV AENRSNERKP ILDAKPMQIQ VNGVSSNFKV VHSTPGSTYY  540
GVVNGGAYGS RENRVESRNF QAQPLNHSAN LYTQNLERVL LGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37234460877Probable WRKY transcription factor 4
2lex_A4e-37234460877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365369KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPCU585403e-78U58540.1 Petroselinum crispum DNA-binding protein WRKY2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127034.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-180WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2R6P4T80.0A0A2R6P4T8_ACTCH; WRKY transcription factor
STRINGVIT_19s0090g01720.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-174WRKY family protein