PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn015881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 650aa    MW: 71462.3 Da    PI: 6.3577
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn015881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-11255311155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Achn015881 255 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 311
                 57*******************4444.2455535555.779999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-8255311IPR001471AP2/ERF domain
CDDcd000183.25E-19255320No hitNo description
SuperFamilySSF541711.7E-14255320IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-11256319IPR001471AP2/ERF domain
PROSITE profilePS5103217.319256319IPR001471AP2/ERF domain
SMARTSM003803.6E-22256325IPR001471AP2/ERF domain
PRINTSPR003673.2E-6257268IPR001471AP2/ERF domain
PROSITE profilePS510329.783308396IPR001471AP2/ERF domain
SMARTSM003802.3E-6355402IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-5356398IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-6371397IPR001471AP2/ERF domain
PRINTSPR003673.2E-6378398IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAYMNNWLGF SLSPQEHQNP QDHSQNSVSR LGFNTDKISG TDVSSDQCFD LTSDSTVLPS  60
LNLPAPFGIL EAFNRNNTHS HSQDWNNNYK TTTDFSMLMG TNNHSLENQG PKLENFLGSH  120
SFAHHGHYMY PPLEAAETAT ATTTTNGANN NNIGLSMIKS WLRNQPTPTP AQPENKNDQG  180
CGVEGSNGNL SLSMSTESQT GSPLHLLAVS GGGSGGGESS ISLDSKQKGT SLDAQTGAIE  240
AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR  300
AYDLAALKYW GTTTTTNFPI GNYEKEIEEM KHMTRQEYVA SLRRKSSGFS RGASIYRGVT  360
SLTCRVRERC TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSILESST LPIGGAAKRL  420
KDAEQAEMSM DTQQIRTTDE GITTSHLTDY GTTLHNWPTI AFQQAQPFSM HYPYGQQRMW  480
CKQEQDEIPP HTFQDLNQIQ LGNTHNFFQP NNNVLHNLMN LDSASLDHNS GSNSGTYSNG  540
VGDGGYVMPI ATVISQEGNN TQGNSGFGDN EVKAYGYETV FGSSDAYHGR NLYYLPQQSQ  600
GCAGKVASVY DQGSTCNNWV PTAVPTLAPR ANNMALCHGS QTFTVWNDT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872279.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-126BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2R6PWJ00.0A0A2R6PWJ0_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-117AP2 family protein