PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn016691

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 251aa MW: 27078.5 Da PI: 8.024

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn016691	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Achn016691 104 YQCKTCDRCFPSFQALGGHRASH 126 9***********99999998887 PP
2	zf-C2H2	14.1	0.00014	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Achn016691 169 HECTICGAEFSSGQALGGHMRRH 191 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.2E-10	104	128	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.201	104	131	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.077	104	126	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.71E-8	104	126	No hit	No description
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.71E-8	164	191	No hit	No description
Pfam	PF13912	5.6E-13	168	192	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.681	169	191	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	169	191	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	171	191	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEVQEEAHNT QIIKGKRTKR IRQASPLALT MAAATLSSTS ELSGSVGQNS SGTITTSSAA 60 TSSHSNQEED QDMANCLILL AQGQNRNLPL PTRPTNKAAG VFLYQCKTCD RCFPSFQALG 120 GHRASHKKPK ASSVLVGKDE VEIDNSVVLS LQIPHRGPST CNVNKFRVHE CTICGAEFSS 180 GQALGGHMRR HRTVSMVKEY EEEKINSTSG LGLDLNLPAP EDDHQESKFA FASKKQVIVF 240 SASSLVDCQY *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028101452.1	2e-87	zinc finger protein ZAT5-like
TrEMBL	A0A2R6RS61	0.0	A0A2R6RS61_ACTCH; Zinc finger protein
STRING	VIT_08s0007g04770.t01	7e-80	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-48	C2H2 family protein