PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn016981

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 240aa MW: 27258.5 Da PI: 8.9802

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn016981	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.9	5.1e-46	13	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF+Ptdee v +yL++k+ + +l+ +v++e+ + k++PwdLp +e++ yfFsk+++ky++g+r+nr+t sgyWkatg+dk+++s+ ++ Achn016981 13 LPPGFRFQPTDEENVFHYLARKIFSLPLPS-SVVPEIILSKFDPWDLP---GDGEQDRYFFSKKESKYQNGNRTNRKTISGYWKATGSDKRITSStRKD 107 79************************99.89***********...4578899*******************************986777 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg++ktLvf++g++p+g++t+W+mheyrl Achn016981 108 IVGMRKTLVFHRGKSPNGSRTHWIMHEYRL 137 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-52	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	52.959	13	168	IPR003441	NAC domain
Pfam	PF02365	3.9E-25	14	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MNKLNFVQGD IKLPPGFRFQ PTDEENVFHY LARKIFSLPL PSSVVPEIIL SKFDPWDLPG 60 DGEQDRYFFS KKESKYQNGN RTNRKTISGY WKATGSDKRI TSSTRKDIVG MRKTLVFHRG 120 KSPNGSRTHW IMHEYRLVDP ETASSSFQNC NSTQDNLGSW VLCRIFLRMR STDNDEEIVR 180 ADKDERHESV RVVHPSSSSC CSSSSSRGSS VITRVVTLSW LGHEENSGCL SPFHHQGDP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-47	11	172	15	169	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-47	11	172	15	169	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-47	11	172	15	169	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-47	11	172	15	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	11	172	18	172	NAC domain-containing protein 19
3swm_B	1e-46	11	172	18	172	NAC domain-containing protein 19
3swm_C	1e-46	11	172	18	172	NAC domain-containing protein 19
3swm_D	1e-46	11	172	18	172	NAC domain-containing protein 19
3swp_A	1e-46	11	172	18	172	NAC domain-containing protein 19
3swp_B	1e-46	11	172	18	172	NAC domain-containing protein 19
3swp_C	1e-46	11	172	18	172	NAC domain-containing protein 19
3swp_D	1e-46	11	172	18	172	NAC domain-containing protein 19
4dul_A	9e-47	11	172	15	169	NAC domain-containing protein 19
4dul_B	9e-47	11	172	15	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028056788.1	3e-83	NAC domain-containing protein 83-like
Swissprot	O22798	2e-65	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A2R6QGB4	1e-162	A0A2R6QGB4_ACTCH; NAC domain-containing protein
STRING	POPTR_0003s16490.1	7e-79	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	2e-67	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]