PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn017661

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 351aa MW: 38233 Da PI: 8.5005

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn017661	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Achn017661 77 WKCDKCSKIYAVQSDWKAHSKTC 99 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.8E-4	65	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MFGSVMSNNK TCLSHEETIS ELSGLNPMVS TISVPHDHQQ PQKIKKKRNL PGNPGKALGD 60 LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG TREYRCDCGT LFSRKDSFVT 120 HRAFCDALAE ESASLSANQF GNTTITTTTT TNPTPHANFN LHPPHYHHQP PPLFPFQNPQ 180 QIHVSLNHPW DPPPQNPNPS LTQNQLTHHI KPETIHLPLP SPQLSSSPFF QPPPPNSAMS 240 SHLSATALLQ KAATVGAQSV GHLASTMTGV SPEYLGFAST WQKSDYLTRD FLGLTGDQCG 300 GGGSGGGDAN VNMRNMLTFT GGVDFPTTAY ERDHTLLKAQ GFGFAEPPAF *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MFGSVMSNNK TCLSHEETIS ELSGLNPMVS TISVPHDHQQ PQKIKKKRNL PGNPGKALGD  60
LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG TREYRCDCGT LFSRKDSFVT  120
HRAFCDALAE ESASLSANQF GNTTITTTTT TNPTPHANFN LHPPHYHHQP PPLFPFQNPQ  180
QIHVSLNHPW DPPPQNPNPS LTQNQLTHHI KPETIHLPLP SPQLSSSPFF QPPPPNSAMS  240
SHLSATALLQ KAATVGAQSV GHLASTMTGV SPEYLGFAST WQKSDYLTRD FLGLTGDQCG  300
GGGSGGGDAN VNMRNMLTFT GGVDFPTTAY ERDHTLLKAQ GFGFAEPPAF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-36	73	137	3	67	Zinc finger protein JACKDAW
5b3h_F	3e-36	73	137	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028123053.1	1e-111	protein indeterminate-domain 12-like isoform X2
Refseq	XP_028123055.1	1e-111	protein indeterminate-domain 12-like isoform X2
TrEMBL	A0A2R6QTY7	1e-177	A0A2R6QTY7_ACTCH; Zinc finger protein like
STRING	XP_006479646.1	4e-95	(Citrus sinensis)
STRING	XP_004290634.1	4e-95	(Fragaria vesca)
STRING	XP_006443977.1	4e-95	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-45	indeterminate(ID)-domain 2