PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn020361
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 242aa    MW: 26999.7 Da    PI: 8.8417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn020361genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
       Achn020361 14 KGAWTKEEDNRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding62.49e-2067111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++ +lG++ W++Ia +m+ gRt++++k++w+++
       Achn020361  67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRMP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.778961IPR017930Myb domain
SMARTSM007172.2E-131363IPR001005SANT/Myb domain
SuperFamilySSF466895.64E-3013108IPR009057Homeodomain-like
PfamPF002495.0E-151461IPR001005SANT/Myb domain
CDDcd001678.78E-111661No hitNo description
PROSITE profilePS5129429.49762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2865116IPR009057Homeodomain-like
SMARTSM007173.5E-1866114IPR001005SANT/Myb domain
PfamPF002491.0E-1767111IPR001005SANT/Myb domain
CDDcd001678.72E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0090379Biological Processsecondary cell wall biogenesis involved in seed trichome differentiation
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDNRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRMPGRT DNEIKNYWNT HIRRKLLNQG  120
IDPATHRPIN EPPTVAAATI SFSTPKKEEK ITDGFGTKDD KNPVQERCPD LNLELRISPP  180
YQHQHEPLRT GNSLCFACSL GIESSTKGCG CSDNGTGSSK AGYDFLGVKS GVLDYRSLEM  240
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099008.11e-140myb-related protein 308-like
RefseqXP_028113336.11e-140myb-related protein 308-like
SwissprotP813931e-114MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2R6R6Y41e-179A0A2R6R6Y4_ACTCH; Myb-related protein
STRINGEOX976941e-133(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-109myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]