PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn020631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 407aa    MW: 45876.3 Da    PI: 6.4492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn020631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.4e-106688426
                ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                e C+f+ r GtCk+G +C+++H+
  Achn020631 66 EDCQFYVRKGTCKFGLNCRYNHP 88
                89********************9 PP
2zf-CCCH32.11.9e-10136159326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C+f++r+G C yG+ CkF+H+
  Achn020631 136 EKECPFYMRNGSCGYGAHCKFHHP 159
                 679********************9 PP
3zf-CCCH24.93.6e-08286312127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C +f rtG+Cky + C+++H++
  Achn020631 286 PGQPECEYFIRTGYCKYKSACRYHHPK 312
                 5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1556290IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-46289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-56692IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-76688IPR000571Zinc finger, CCCH-type
SMARTSM003565093115IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.11795116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6134160IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4139158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155285313IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011285312IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5287312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5289314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
METEEANTTS SPKPQSNQPL LESVSSDVFE GFAEEEEALS QRLENVRLGS NEDESIESLP  60
LRPYAEDCQF YVRKGTCKFG LNCRYNHPVR RVNHQYYLTQ EGCKYGKFCR YNHSKEESEI  120
APPELNFLGL PIRVGEKECP FYMRNGSCGY GAHCKFHHPD PTDIGGYDPH NSTCNDESFG  180
KYGSPSENYN GESIPMHVSG ESQKAQASWS TQMLSDKVVP YPENHTSYIP TMHFLPQEAL  240
QTPEWNGYQA SNYPDDMARH PHSTPAMSLT SQAYISSQLE EFPERPGQPE CEYFIRTGYC  300
KYKSACRYHH PKHQFPKAEC VLSDNGLPLR PIISFFIAKF LTDGVPPTKL PSCIRISKSL  360
ERGRGCGLWR TESGKGKVIL AVAVAFGVGI VRKAEFRDLE GGGWRY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268612.11e-108PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLA0A2R6RZ090.0A0A2R6RZ09_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_14s0219g00170.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1640855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-73C3H family protein