PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn021021
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 303aa    MW: 33421.8 Da    PI: 8.0978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn021021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM972.8e-30151452128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                 ppG+rF P++e+lv +yL +k ++++   +++i+e+d+y+++P dLp             ++++wy ++ ++  ++     +r +  gyW+  gk ++v
  Achn021021  15 PPGCRFYPSEEQLVYYYLIHKNNDDRRFGFDAINEIDLYNYNPFDLPDtacfrfG--RggRKRHWYCYVGARVLKQG---GRRRAGGGYWRRRGKARDV 108
                 8********************99999777799**************944677432..32255688888887665543...3444689************ PP

         NAM  93 lskkgelvglkktLvfykgrapk.gektdWvmheyrl 128
                 +  ++ +vg+++t+vfy g++p+ + +tdWvm ey+l
  Achn021021 109 VGGGKVAVGTRRTFVFYLGDSPDtAARTDWVMYEYAL 145
                 **99999**********997765167*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-3511161IPR003441NAC domain
PROSITE profilePS5100536.32314161IPR003441NAC domain
PfamPF023651.0E-1715145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGDPLDPKPP SISRPPGCRF YPSEEQLVYY YLIHKNNDDR RFGFDAINEI DLYNYNPFDL  60
PDTACFRFGR GGRKRHWYCY VGARVLKQGG RRRAGGGYWR RRGKARDVVG GGKVAVGTRR  120
TFVFYLGDSP DTAARTDWVM YEYALIDRHE ASFILCRLFV KSKCRNNNSE HVLSSCGDGS  180
VGTLRHIGIQ HDGTITSGIG EGIVRDEASV DKKNEVLKGN VGTAGAVAHA GVQVPSSVQP  240
NEPICHTCYR VKVQYMQVTA GLTGAASMLI GCSAAHHLMS ILEDDYIELD DLSCPLSGID  300
FT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-22316210166NO APICAL MERISTEM PROTEIN
1ut4_B4e-22316210166NO APICAL MERISTEM PROTEIN
1ut7_A4e-22316210166NO APICAL MERISTEM PROTEIN
1ut7_B4e-22316210166NO APICAL MERISTEM PROTEIN
4dul_A4e-22316210166NAC domain-containing protein 19
4dul_B4e-22316210166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896GGRRRAGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080414.11e-129NAC domain-containing protein 72-like isoform X1
TrEMBLA0A2R6Q0R00.0A0A2R6Q0R0_ACTCH; NAC domain-containing protein
STRINGVIT_18s0001g10250.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.18e-22NAC domain containing protein 53