PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn021861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 175aa    MW: 19765.6 Da    PI: 8.6804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn021861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.9e-101464655
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                + +Er+RR  ++  +++L +l+P+ ++k ++ ++s    L +A  YI++L+
  Achn021861 14 KTAERNRRIYMKGLYFKLTSLIPPpRFKSSKDRVSQHNLLDQAATYINQLK 64
                679*********************888**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.90E-4667No hitNo description
PROSITE profilePS508889.547863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-91077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-91272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-71463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-51469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKKCESSNEK LDRKTAERNR RIYMKGLYFK LTSLIPPPRF KSSKDRVSQH NLLDQAATYI  60
NQLKERVDEL KARRAIAMTN TCTNNNTTRD TRMFRSYELP VVELKDLGSS FEVVLITGLE  120
RNLMMHEVIG MLEDEGAEVV SASFSTVGDK VFHTYHAQGI MDSLQLDSSG AILA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121201.17e-69transcription factor bHLH162-like isoform X1
TrEMBLA0A2R6QGS41e-105A0A2R6QGS4_ACTCH; Transcription factor like
STRINGXP_008239749.11e-58(Prunus mume)
STRINGVIT_17s0000g08150.t019e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-24bHLH family protein