PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn022171
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 439aa    MW: 49022.8 Da    PI: 10.1718
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn022171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.3e-32282339359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Achn022171 282 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 339
                 9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-17233278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.0E-34268339IPR003657WRKY domain
PROSITE profilePS5081130.572275341IPR003657WRKY domain
SuperFamilySSF1182902.35E-27278340IPR003657WRKY domain
SMARTSM007741.3E-39280340IPR003657WRKY domain
PfamPF031061.4E-27282339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEEVEEANNV AVECSHRVLR LLSQPQDQTQ FRNLMVETGV AVSSFKRVVS LLDSGLGHAR  60
VRKLKKIQNA FPQSILLENQ ICKTDHQPKP VQLLQSNFLE NPIQEMGSLV KSSLTLGTPS  120
LDMTSNEQKP LQLAQKTPQP DYHNFFQQQQ QQRIQLQQQQ QQQMKQHAEM MYRRSNSGIS  180
LNFDSSTCTP TMSSTRSFIS SLSMDGSVAN LNGNRFHLIG AAGSSDQNSH QHKRKCSGKG  240
DDGSVKCGSS SRCHCSKKRK HRVKRSIKVP AISNKLADIP PDEYSWRKYG QKPIKGSPHP  300
RGYYKCSSMR GCPARKHVER CLEDPSMLIV TYEGEHNHPR RGDWHSGLER QTKVCRYGAK  360
QKNFVVLGLS SGCTMKLRTD GSSKGNLGPA GNGALVMRDG CGNKGGINKA TSLEVEMRSV  420
LRDLMIVKER NVYDLVQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202763381071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124442.10.0probable WRKY transcription factor 21
SwissprotO043361e-123WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2R6QDX50.0A0A2R6QDX5_ACTCH; WRKY transcription factor
STRINGXP_010038933.11e-177(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-99WRKY DNA-binding protein 21