PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn022801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 536aa    MW: 58777.5 Da    PI: 10.1743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn022801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036469491223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp C+++Fs+   L+ H  + H
  Achn022801 469 QCPQCNMRFSSVTALVEHVEKvH 491
                 7*****************99888 PP
2zf-C2H217.98.6e-06507529223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C+k F+++  L++H  + H
  Achn022801 507 VCPKCSKGFRDPVALVKHVERdH 529
                 7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010205.8E-9337243IPR005711Ribosomal protein S5, eukaryotic/archaeal
SuperFamilySSF547686.38E-2280149No hitNo description
Gene3DG3DSA:3.30.160.201.6E-3481146IPR014720Double-stranded RNA-binding domain
PROSITE profilePS5088123.10984147IPR013810Ribosomal protein S5, N-terminal
PfamPF003339.3E-3284148IPR013810Ribosomal protein S5, N-terminal
PROSITE patternPS005850101133IPR018192Ribosomal protein S5, N-terminal, conserved site
Gene3DG3DSA:3.30.230.101.2E-34155230IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
SuperFamilySSF542111.87E-24160240IPR020568Ribosomal protein S5 domain 2-type fold
PfamPF037195.7E-25167234IPR005324Ribosomal protein S5, C-terminal
Gene3DG3DSA:4.10.1110.103.0E-10331398IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.59E-9333385No hitNo description
PfamPF014282.0E-7341381IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.078468496IPR007087Zinc finger, C2H2
SMARTSM003550.0033468491IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.87E-5469525No hitNo description
PfamPF138940.0011469491No hitNo description
PROSITE patternPS000280470491IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995506534IPR007087Zinc finger, C2H2
SMARTSM003555.4506529IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280508529IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005618Cellular Componentcell wall
GO:0009506Cellular Componentplasmodesma
GO:0016020Cellular Componentmembrane
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAERGGDRGG FGRGFGRGGR GGDRGGRGGR RRNPRREEEE KWVPVTKLGR LVKDGKIQTL  60
EQIYLHSLPI KEHQIIDTLV GPSLKDEVMK IMPVQKQTRA GQRTRFKAFV VVGDGNGHVG  120
LGVKCSKEVA TAIRGAIILA KLSVIPVRRG YWGNKIGKPH TVPCKVTGKC GSVTVRMVPA  180
PRGAGIVAAR VPKKVLQFAG IEDVFTSSRG STKTLGNFVK ATFDCLLKTY GFLTPDFWTE  240
TSFSRSPYQE FTDLLLAKPS SSKITFVEDV PERVFCLEHR SYIKHECPKA NKQDVTVVIC  300
PLCAKGVRLI PDEDPNITWE SHVNTECDPS NYEKATKKRK CPVRGCREML TFSNTIKCRD  360
CTVDHCLKHR FGPDHNCPGP KKADTSFQFM SFMNKSRKEE PKPASWTPAT SSSKWSTSLL  420
NAASSFRATA EAGMAKLSSE FSQKMQTTRD GVGPSSSGCS SGGGNQVEQC PQCNMRFSSV  480
TALVEHVEKV HERNDGRAGV MKVTIDVCPK CSKGFRDPVA LVKHVERDHG GTSKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SE1e-140362623826240S ribosomal protein S2
4v7e_BC1e-140362623826240S ribosomal protein S5
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1717RGGFGRGFGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A178VKM10.0A0A178VKM1_ARATH; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-102C2H2 family protein