PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn023041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 451aa    MW: 49994.3 Da    PI: 4.5
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn023041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.9e-13147189754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A++YI++L
  Achn023041 147 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIQEL 189
                 57*********************66......****************99 PP
2HLH11.40.000612502673754
                 -STCHHHHHHHHHHHHHH CS
         HLH  37 KlsKaeiLekAveYIksL 54 
                  ++Ka+i + A++YI++L
  Achn023041 250 EMDKASIIKDAIDYIQEL 267
                 579*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-17140204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.952140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-13143194No hitNo description
Gene3DG3DSA:4.10.280.109.1E-17146204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-15146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-11147189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.594216267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-6227282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4230273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-7250282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF004281.2E-11399449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MQILFSKVAK VTILLQLTVL SHDRIALLYL ESWQKVDQRP NQYFAPHYER LPKFSNLRPT  60
ACFYVMMSVP ATYCMTQAKG SLSLSPTPTP SPTMENIGDE YKHYWETTMF LQTEEFDSWG  120
LDEAFSGYYD SSSPDGAQSS AASKNIVSER NRRKKLNERL FALRSVVPNI SKMDKASIIK  180
DAIDYIQELH DQERRIQAEI LELESGKLSN NAMIFDSEEE IPALLRSKKK KMEQNFDSGE  240
STVSPIEDLE MDKASIIKDA IDYIQELHDQ ERRIQAEILE LESGKLSNNA MIFDSEEEIP  300
ALLRSKKKKM EQNFDSGEST VSPIEDLEGL FRMGVFTFVC RSSGGDWCAK QLSGDLEASA  360
ASTYELQRKL VQLSLSADSS GGVHTSFSLI TPSSAVFQVI IGGGAFIGGG ASAAAAPAGA  420
ASAAEAPPPE EKKPEKEESE DEDMGFSLFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-13145205969Transcription factor MYC2
5gnj_B4e-13145205969Transcription factor MYC2
5gnj_E4e-13145205969Transcription factor MYC2
5gnj_F4e-13145205969Transcription factor MYC2
5gnj_G4e-13145205969Transcription factor MYC2
5gnj_I4e-13145205969Transcription factor MYC2
5gnj_M4e-13145205969Transcription factor MYC2
5gnj_N4e-13145205969Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359948.11e-83PREDICTED: transcription factor bHLH35
TrEMBLA0A2R6S2841e-107A0A2R6S284_ACTCH; Transcription factor bHLH35 like
STRINGXP_009359948.14e-83(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.29e-51bHLH family protein