PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn023491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 245aa    MW: 27789.4 Da    PI: 6.2385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn023491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-1559107356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y GVr  ++ grWv+eIr p++   ++r++lg++ ++e+Aa+a++aa  +l+ge
  Achn023491  59 YVGVR--SRGGRWVSEIRIPKT---KTRIWLGSHHSPEKAARAYDAALYCLKGE 107
                 88995..779*********954...5*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.50.1402.5E-17148IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502493.56E-16148IPR012340Nucleic acid-binding, OB-fold
PfamPF003667.2E-18248IPR000266Ribosomal protein S17/S11
ProDomPD0012952.0E-15245IPR000266Ribosomal protein S17/S11
PROSITE profilePS5103217.47747114IPR001471AP2/ERF domain
SMARTSM003802.6E-2358120IPR001471AP2/ERF domain
CDDcd000182.22E-2259116No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2159115IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-1459115IPR016177DNA-binding domain
PfamPF008471.4E-759107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVVSNKMQKS VVVAVDRLFH HKVYDRYVKR TSKFMAHDEH NLCNIGDRKG SRRRGKGPYV  60
GVRSRGGRWV SEIRIPKTKT RIWLGSHHSP EKAARAYDAA LYCLKGEQGS FNFPNNRRPD  120
LANRSVGSLP VDEIQCIAAE FSCFDDSVAT SEPFPMSPLI EAHLSPEPPV TPDPQNVNEM  180
EANKVDDEPY FPAFMQEEEP YVPTFVPEEP YVPAYVPEAS PMLHGDLLLD EWLTLDGDWM  240
RTFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2238802e-52CU223880.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6R4121e-130A0A2R6R412_ACTCH; Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1877423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.13e-30ERF family protein