PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn023811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 138aa    MW: 15850.3 Da    PI: 9.5646
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn023811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.51.3e-1416482456
                S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +p+++e+++LAk+l+L  rqV vWFqNrRa+ k
  Achn023811 16 KPNEKEKQDLAKQLNLRPRQVEVWFQNRRARTK 48
                69*****************************98 PP
2HD-ZIP_I/II92.93.4e-3018842592
  HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                 + ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l+een+rL+ke +eLr +lk
   Achn023811 18 NEKEKQDLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKYCETLTEENRRLQKELQELR-ALK 84
                 6789***********************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-12858IPR009057Homeodomain-like
SMARTSM003890.0022954IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.1E-131648IPR009057Homeodomain-like
PfamPF000464.4E-121648IPR001356Homeobox domain
CDDcd000869.82E-91751No hitNo description
PROSITE profilePS5007113.5721750IPR001356Homeobox domain
PROSITE patternPS0002702548IPR017970Homeobox, conserved site
PfamPF021836.0E-105084IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-235093IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MVGVFWQFWS NLVLIKPNEK EKQDLAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK  60
KYCETLTEEN RRLQKELQEL RALKTSQPFY KQLPATTLTM CPSCERCVAS TAYAASITAT  120
AAAATDNTTL CLSKPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14250RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066527.12e-58homeobox-leucine zipper protein HOX11
SwissprotP466656e-51HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2R6S1Z55e-78A0A2R6S1Z5_ACTCH; Homeobox-leucine zipper protein
STRINGcassava4.1_010584m2e-53(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-50HD-ZIP family protein