PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn024291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 342aa    MW: 37909.9 Da    PI: 9.3738
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn024291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.7e-114167127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++ + C +++rtG C yG +C+++H++
  Achn024291 41 PGVPDCAYYMRTGSCGYGTKCRYNHPR 67
                5789*********************96 PP
2zf-CCCH40.15.9e-1387113127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C++++rtGtCk+G++CkF+H++
  Achn024291  87 PGEPTCQYYSRTGTCKFGASCKFHHPK 113
                 57899********************96 PP
3zf-CCCH35.41.7e-11193219127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C++++++G Ck+G++C+++H+p
  Achn024291 193 PGQPDCQYYLKSGDCKFGSSCRYHHPP 219
                 5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0614068IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54067IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-64468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-54667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4686114IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-786113IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-1088113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-592114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53192220IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6192219IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8194219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5197220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4198218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MFPFRVLEGL PQMANGRRAR KLESMRRLGF WGREFIYPER PGVPDCAYYM RTGSCGYGTK  60
CRYNHPRDRS SVGGAVSFAG GEYPERPGEP TCQYYSRTGT CKFGASCKFH HPKNDGGSMT  120
NVPLNSYGYP LRPGPVSPAL SPGAQPSVLA GSVYGVTQLS SSAPAFAGPY SSFPYPAGPS  180
SSGQNERVFP ERPGQPDCQY YLKSGDCKFG SSCRYHHPPD WVVSKTNCVL NHLGLPLRPL  240
TKLNKREREQ FQYFVCLGEN QNSTILPSEC RYPLRDSPIR YPSPGSSGSW ILEQKMETVV  300
KVLQPGPLGI VEHKFSAEEI REANATVKRA IDTWRRKANL E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776617.11e-113PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
RefseqXP_016506830.11e-113PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-64C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2R6PNY21e-121A0A2R6PNY2_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009776613.14e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2129422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-63C3H family protein