PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn024331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 1801aa    MW: 200487 Da    PI: 7.4347
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn024331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.7e-24134235199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k ltpsd++++g +++pk++a+e+       + +++  ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv a+++ +gD ++F   + +++el
  Achn024331 134 FSKRLTPSDTSTHGGFSVPKRYADECfpsldmsQDPPA--QELVAKDLHGSEWRFRHIYRGQPKRHLLTSGWSAFVGAKKVVAGDACLFL--RGENGEL 228
                 8899***************************7544444..48************************************************..449999* PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++v+r+
  Achn024331 229 YIGVRRA 235
                 *****97 PP
2Auxin_resp101.21.4e-33260345183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a ha+st+++F+v+Y+P++s++eF+++++++ k+ ++ +svG+Rf+m fe+e+++e ++   +Gtvvg+ ++dp+rW +S+Wr+Lk
  Achn024331 260 AFHAISTGTMFTVYYRPWTSPAEFIIPRDQYTKSAENDYSVGTRFRMPFESEECPENKYcrfAGTVVGIDNIDPIRWAGSEWRCLK 345
                 689*****************************************************9988889*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-37125263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-38130247IPR015300DNA-binding pseudobarrel domain
CDDcd100179.87E-23133234No hitNo description
PfamPF023622.7E-22134235IPR003340B3 DNA binding domain
SMARTSM010193.4E-22134236IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578134236IPR003340B3 DNA binding domain
PfamPF065075.7E-30260345IPR010525Auxin response factor
SuperFamilySSF542778.83E-6612677No hitNo description
PfamPF167702.0E-715641645IPR001357BRCT domain
PROSITE profilePS501729.05515651654IPR001357BRCT domain
SuperFamilySSF521136.69E-1815671670IPR001357BRCT domain
SMARTSM002922.0E-715671644IPR001357BRCT domain
Gene3DG3DSA:3.40.50.101905.3E-1515681655IPR001357BRCT domain
CDDcd000277.33E-615891640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1801 aa     Download sequence    Send to blast
MASRNDVQVQ KVETINDVSR CNNQGEKDDL YTQLWHACAG PLVHVPRVGD KVFYFPQGHM  60
EQVEAYTNKD GEVEMPVYNL PSRILCKVVY VQLKAEAQTD EVFAHITLLP EQEGPSLEHG  120
TSQSVPQKVN TCSFSKRLTP SDTSTHGGFS VPKRYADECF PSLDMSQDPP AQELVAKDLH  180
GSEWRFRHIY RGQPKRHLLT SGWSAFVGAK KVVAGDACLF LRGENGELYI GVRRASKPDT  240
IMSTSVISGH SMQHGILASA FHAISTGTMF TVYYRPWTSP AEFIIPRDQY TKSAENDYSV  300
GTRFRMPFES EECPENKYCR FAGTVVGIDN IDPIRWAGSE WRCLKVQWDS PPDTIVLPER  360
VSPWNIEPML KKKKCNSLFP HRKRARPQDP STPGFPVVVQ DGFLKGSVEY TPKRLSWVLQ  420
GQEIRGTGAC AFGASTQPNS DWHHQLVGSE NQLPFQMHDP FSRGSTISVP GGIPPNPRLT  480
NYWPSPFTLI GDCVEASKSV SFPKVNPTGS VSQDWKASEE KKDEVKSPLE KPIGNDKCML  540
FGVNIFSSPP ELPSPQVVSS TELHSLCPAP PATSHSSISE HVQVSEPSKS ISGNLSEKQC  600
KNCCSNANRS CTKVLKYGTA LGRSVDLTRF DDYGKLIREL DQMFDFKGTL IDKSSGWYVT  660
YTDGEGDMML TGDYPWPSSS EETPLQNVDG DAEVQDIPDY VKDTESQMVD DYEEEVVLDS  720
DDELAHKTEM VSIKELSSGA PQRTAGGDVL DTSCVQYKDF VLGSTASARK QCHIGYVRRG  780
AGSASHRPNP IHSDACSQKQ LVIKDNETPR PEDQFSGEKK VSEAVKDRDN LESNVNIGKF  840
KDDPRSGDVL GKISTRNTFG GCKLSETKCD SSGCENDCTL LISEHDTEEL RHNESQEPGE  900
LSQANALDVV DHYLSFNNMN LSEESAPTKT SRQKSPPILC AKGPQIMARR ARFRMPGTFE  960
WVDNQIDDEE GDLLIKRKDL NLHGEGPEPA SVTRHLSAID LNVQRRRNLD IQHKEKFQGE  1020
DMGVDFSNSS FIGLNSEEVD QVSEMKFAEE IDEQLNSESG QELEARDVEP DIFDVGFDTQ  1080
MAAEAMEALF YAPLPNSNLD SSHQYPDKMV EDSSIGAAEK CSFSTRDHSN SRVAARKLKQ  1140
SKRPSKKLSG KTFSSSRKNK KSQNELNPEI PKANKMKRGK SLAENHITFE KLTNAQEHSR  1200
QSSFKLNGQG KEDKILGRYN IKKGTKNLIS SVAVKHNSIE EGPSEGKHRT FAPITHETRS  1260
SPSVCPLKGI EDPIKSSGKR MSDVMEASDL KKRNNNSQND DMHQVPIVRR KRLKIGLHIS  1320
EEAAGVKVSQ QAEKELGVAP PGSHLKLDAW SYPKGKRKNR NLPHHLKGLS DICLPSTLAN  1380
GEKGNGYAIE SHKKSPGNSE RSCFNVYVRR KPRSSAYACQ VRSSLVKNCD ESLLRQSSDN  1440
RSSADVCSGS FVMNRKMTAL DPDRVQAYRK SEEPDHADFT SPTDGVNGNI KLDILSRRNA  1500
KASFPKCPSP VNNTKGLDLV PAIHKDDQNC KQMHNRNLFR FPRMKELISL GFSGSLTEIT  1560
SKDLRRRRDM AHVRVVFSQN LEDDIIKQQK KILARLGSSI ASCCSDATHF IADRFVRTKN  1620
MLEAIALGKP VVTHLWIDSC GQASCYIDEK NCILRDAKKE KEIGFSMPVS LAQARQNPLL  1680
KQGRRVFVTP NVKPGKELIE SLVKAAHGQA VDRIQEAVMK NKIFPGDVLI ISSEQDYALC  1740
TPFLDKGAAV YSSELLLNGI IIQKLEFERH QLFEHHLKGN CSRTGPKKHG DWSLPVPICK  1800
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1302836917355Auxin response factor 1
4ldw_A1e-1302836917355Auxin response factor 1
4ldw_B1e-1302836917355Auxin response factor 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112901311KKRNNNSQNDDMHQVPIVRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099811.10.0uncharacterized protein LOC114299295
RefseqXP_028099812.10.0uncharacterized protein LOC114299295
TrEMBLA0A2R6PNZ40.0A0A2R6PNZ4_ACTCH; PAX-interacting protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1732833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-149auxin response factor 2