PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn025821

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

BBR-BPC

Protein Properties

Length: 357aa MW: 39599.3 Da PI: 9.4806

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn025821	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	358.5	1.4e-109	44	356	1	301
GAGA_bind 1 mdddgsre..rnkg....yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla. 92 mdd+g+re r+k+ ++ ++s+ +q+m ++aerda+++ernla+sekkaa+aerd a lqrd+a+aern+al+ rdn++++++++en+++ Achn025821 44 MDDSGHREngRHKPpqgqWFMCQPSM-----KQIMVVMAERDAATQERNLAFSEKKAALAERDLAILQRDSAIAERNNALMARDNAIATIQYRENAMSr 137 99999987788876322223333455.....5**************************************************************999 PP GAGA_bind 93 ....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185 ++p+g+q+++g+k++++ qq l++ p++++ + ++++++ l ++ +a e k ++ak++ke k + ++kk+++s kkvk+e +++ Achn025821 138 gnmsPQCPPGCQISPGVKHMHHPQQnLNHkPHMDEVLHDSGDMHTSDGLSMSP---VALEP---TKLRQAKQTKEVKPRTPNKKPSESSKKVKREDDPS 230 998889**************98555588888888888888777665443...22222...22234445555555555555555555555555443 PP GAGA_bind 186 r...........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273 + sk ++k +dl+ln++++De+ +P PvCsCtG lr CYkWGnGGWqS+CCttt+S+yPLP+++++r+aRi+grKmS++af+klL++La Achn025821 231 KmilgksrggnmSKPDWKGQDLGLNQIAFDETMMPGPVCSCTGFLRPCYKWGNGGWQSSCCTTTMSMYPLPAVPNKRHARIGGRKMSGSAFSKLLSRLA 329 345555566666*********************************************************************************** PP GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301 +eG+ lsnpvDLkdhWA+HGtn+++ti+ Achn025821 330 GEGH-LSNPVDLKDHWARHGTNRYITIK 356 9.*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.5E-143	44	356	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.9E-95	44	356	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MFAVDLPFEL NVLGHNCDPL GMDGAQVGVL KQTHQLFLTV ELQMDDSGHR ENGRHKPPQG 60 QWFMCQPSMK QIMVVMAERD AATQERNLAF SEKKAALAER DLAILQRDSA IAERNNALMA 120 RDNAIATIQY RENAMSRGNM SPQCPPGCQI SPGVKHMHHP QQNLNHKPHM DEVLHDSGDM 180 HTSDGLSMSP VALEPTKLRQ AKQTKEVKPR TPNKKPSESS KKVKREDDPS KMILGKSRGG 240 NMSKPDWKGQ DLGLNQIAFD ETMMPGPVCS CTGFLRPCYK WGNGGWQSSC CTTTMSMYPL 300 PAVPNKRHAR IGGRKMSGSA FSKLLSRLAG EGHLSNPVDL KDHWARHGTN RYITIK*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MFAVDLPFEL NVLGHNCDPL GMDGAQVGVL KQTHQLFLTV ELQMDDSGHR ENGRHKPPQG  60
QWFMCQPSMK QIMVVMAERD AATQERNLAF SEKKAALAER DLAILQRDSA IAERNNALMA  120
RDNAIATIQY RENAMSRGNM SPQCPPGCQI SPGVKHMHHP QQNLNHKPHM DEVLHDSGDM  180
HTSDGLSMSP VALEPTKLRQ AKQTKEVKPR TPNKKPSESS KKVKREDDPS KMILGKSRGG  240
NMSKPDWKGQ DLGLNQIAFD ETMMPGPVCS CTGFLRPCYK WGNGGWQSSC CTTTMSMYPL  300
PAVPNKRHAR IGGRKMSGSA FSKLLSRLAG EGHLSNPVDL KDHWARHGTN RYITIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884822.1	1e-166	protein BASIC PENTACYSTEINE6
Refseq	XP_015884824.1	1e-166	protein BASIC PENTACYSTEINE6
Refseq	XP_015884825.1	1e-166	protein BASIC PENTACYSTEINE6
Refseq	XP_015884826.1	1e-166	protein BASIC PENTACYSTEINE6
Refseq	XP_024930418.1	1e-166	protein BASIC PENTACYSTEINE6
Refseq	XP_024930420.1	1e-166	protein BASIC PENTACYSTEINE6
Refseq	XP_024930421.1	1e-166	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	1e-130	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A2R6R032	0.0	A0A2R6R032_ACTCH; Protein BASIC like isoform 2
STRING	GLYMA04G02860.1	1e-158	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5353	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-133	basic pentacysteine 6