PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn025961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 127aa    MW: 14504.2 Da    PI: 9.3927
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn025961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07851344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT    +++ +a + + ++   +W  +ar +g g++ +++k ++
       Achn025961  8 TWTHKQNKKFEEALAFFDKDtpdRWQNVARAVG-GKSVEEVKRHY 51
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.253459IPR017884SANT domain
SMARTSM007172.5E-6557IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-11762IPR009057Homeodomain-like
CDDcd001673.04E-5851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MASSSSSTWT HKQNKKFEEA LAFFDKDTPD RWQNVARAVG GKSVEEVKRH YEILEKDIMQ  60
IESDRVPLPN YRSAGSNSRG CGNERRQYGG NKTATRNLIF IIRRFKECNY VHPPDKVGED  120
YLYANG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-29179181RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.13e-44protein RADIALIS-like 3
SwissprotQ1A1736e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2R6R3G72e-54A0A2R6R3G7_ACTCH; Protein RADIALIS-like (Fragment)
STRINGXP_009611761.12e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-36RAD-like 6