PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn026021

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 511aa MW: 53725.9 Da PI: 8.5987

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn026021	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Achn026021 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	11.4	0.001	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C k + +s+ k H++t+ Achn026021 156 WKCERCAKKYAVQSDWKAHLKTC 178 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	79	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.65E-7	79	102	No hit	No description
Pfam	PF12171	8.2E-5	80	102	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	80	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	121	151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	144	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.65E-7	151	176	No hit	No description
SMART	SM00355	200	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MVELENSSSM AVSAEASVSS SGELMTIPPV TAEKKKRNLP GMPALVSYAI VSKFDRRDAT 60 DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRP RAGKEVRKRV 120 YVCPEPTCVH HDPKRALGDL TGIKKHFCRK HGEKKWKCER CAKKYAVQSD WKAHLKTCGT 180 REYRCDCGTL FSRRDSFITH RAFCDALAQE SARAQTLPVA DSEGTLTVQT LASSSSSPPQ 240 PPLTPSTGVL SPVLSIQSSE AQENLPALLV QQQQVAVSSA TTAITITTGS PSTTGGNGLN 300 SSVGVFASIF ASSAPPGLSQ PSQSPSSFSD MLCAMAGPGP YSSEPMSLSL SSSLYLSTNP 360 SPLFPTTAQD RHHHCSPQPA LSATALLQKA AQMGATGSGS LLRGLGLELP SSSNNLVKTE 420 NISIESGLVL GLPTGGPSHF MGPSSLYGNE PTTLDLLGLG MGGGGASTAG FSALLTSMGG 480 GLDVATATAF RVNSNGDSWT GPSERKPSLL *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MVELENSSSM AVSAEASVSS SGELMTIPPV TAEKKKRNLP GMPALVSYAI VSKFDRRDAT  60
DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRP RAGKEVRKRV  120
YVCPEPTCVH HDPKRALGDL TGIKKHFCRK HGEKKWKCER CAKKYAVQSD WKAHLKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAQE SARAQTLPVA DSEGTLTVQT LASSSSSPPQ  240
PPLTPSTGVL SPVLSIQSSE AQENLPALLV QQQQVAVSSA TTAITITTGS PSTTGGNGLN  300
SSVGVFASIF ASSAPPGLSQ PSQSPSSFSD MLCAMAGPGP YSSEPMSLSL SSSLYLSTNP  360
SPLFPTTAQD RHHHCSPQPA LSATALLQKA AQMGATGSGS LLRGLGLELP SSSNNLVKTE  420
NISIESGLVL GLPTGGPSHF MGPSSLYGNE PTTLDLLGLG MGGGGASTAG FSALLTSMGG  480
GLDVATATAF RVNSNGDSWT GPSERKPSLL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	152	217	3	68	Zinc finger protein JACKDAW
5b3h_F	1e-35	152	217	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122429.1	0.0	zinc finger protein ENHYDROUS-like isoform X1
Swissprot	Q9LVQ7	1e-145	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2R6QXU0	0.0	A0A2R6QXU0_ACTCH; Protein indeterminate-domain like
STRING	VIT_18s0001g12220.t01	1e-178	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]