PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn026311

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 577aa MW: 62957.5 Da PI: 7.3011

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn026311	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.5e-30	320	378	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Achn026311 320 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 378 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	2.09E-26	319	380	IPR003657	WRKY domain
PROSITE profile	PS50811	28.139	319	380	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.7E-30	319	380	IPR003657	WRKY domain
SMART	SM00774	2.3E-36	319	379	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	321	378	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MKEKVKLSID ETKTKPPQGP CLYRVPLPAV KRLTRLTHDL TGWGLTLESD PIGFFENKPR 60 LNRNLFLGME FPLNLNRRGE QGNSQPSDEN RTVNGVVDFF ANKNKSNDHD RVDSRAGINI 120 KKEKSPEIAP RTDLNVNTGL HLLTTNTGSD QSMVDDGVSS VAEDKRAKNE LAILQVELER 180 MNAENQRLRG MLSQVSNNYS TLQLHLMTIM QQQQQQQQSS RAESTHQHQI AEGRSEDKKQ 240 ESVLPRLPRQ FMELGPIAAM ETDDPPSQSS SEERTHSGSI HNNKNDIVPF DQEKGNYRDG 300 KVIGREESPE SDGWVPNKIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC 360 AEDRTILITT YEGTHNHPLP PAAMAMASTT SAAASMLLSG SMSSADGLMN PNFLARAILP 420 CSSNMATISA SAPFPTVTLD LTHNPNPVHL PRPTTQFPFA AAPQPPSPAM AQVFGQALYN 480 QSKFSGLHVS QDAEAAQLGH HPPPHHSFAD TLTAATAAIT ADPNFTAALA AAISSIMGGA 540 PPNSNNTTTN NTASTLTTNT NTATSNYHQI IGLPEN*

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MKEKVKLSID ETKTKPPQGP CLYRVPLPAV KRLTRLTHDL TGWGLTLESD PIGFFENKPR  60
LNRNLFLGME FPLNLNRRGE QGNSQPSDEN RTVNGVVDFF ANKNKSNDHD RVDSRAGINI  120
KKEKSPEIAP RTDLNVNTGL HLLTTNTGSD QSMVDDGVSS VAEDKRAKNE LAILQVELER  180
MNAENQRLRG MLSQVSNNYS TLQLHLMTIM QQQQQQQQSS RAESTHQHQI AEGRSEDKKQ  240
ESVLPRLPRQ FMELGPIAAM ETDDPPSQSS SEERTHSGSI HNNKNDIVPF DQEKGNYRDG  300
KVIGREESPE SDGWVPNKIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC  360
AEDRTILITT YEGTHNHPLP PAAMAMASTT SAAASMLLSG SMSSADGLMN PNFLARAILP  420
CSSNMATISA SAPFPTVTLD LTHNPNPVHL PRPTTQFPFA AAPQPPSPAM AQVFGQALYN  480
QSKFSGLHVS QDAEAAQLGH HPPPHHSFAD TLTAATAAIT ADPNFTAALA AAISSIMGGA  540
PPNSNNTTTN NTASTLTTNT NTATSNYHQI IGLPEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	319	382	14	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028067460.1	0.0	probable WRKY transcription factor 31
Swissprot	Q9C519	1e-129	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A2R6QLW0	0.0	A0A2R6QLW0_ACTCH; WRKY transcription factor
STRING	XP_010252466.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA945	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-106	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]