PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn029831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 213aa    MW: 23278.6 Da    PI: 6.2658
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn029831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.4e-15161195133
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                 C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ k
  Achn029831 161 CTHCGISSksTPMMRRGPGGPRTLCNACGLFWANK 195
                 *****99999**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.285590IPR010399Tify domain
PfamPF062002.3E-75980IPR010399Tify domain
PfamPF062039.0E-1793135IPR010402CCT domain
PROSITE profilePS5101712.6393135IPR010402CCT domain
SuperFamilySSF577162.52E-10154197No hitNo description
SMARTSM004014.7E-10155208IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-13160195IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.63E-12161195No hitNo description
PfamPF003204.8E-13161196IPR000679Zinc finger, GATA-type
PROSITE patternPS003440161188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MYGHTQSMNA SDRFAAAEDD SSAGGDDSVG IDGVEVVPPD AVYGDGGGQE APLQRSDCSN  60
QLTLSFRGQV FVFDDVTTDK DLDYPLRCSQ PQRAASLNRF RQKRKERCFD KKIRYNVRQE  120
VALRMQRNKG QFTSSKKSEG AARWSTAEDS AQDDTPPETL CTHCGISSKS TPMMRRGPGG  180
PRTLCNACGL FWANKSEGVE YNSDYGTPIG TH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061947.11e-102GATA transcription factor 25-like isoform X1
SwissprotQ9LRH61e-65GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2R6QY911e-147A0A2R6QY91_ACTCH; GATA transcription factor
STRINGVIT_18s0001g07720.t011e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-59GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]