PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn029931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 518aa    MW: 60812.9 Da    PI: 5.7395
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn029931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.4e-352293212103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isws+ +nsfvv+d++ fa ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++          eF+++ F +g+k+ll++i+
    Achn029931 229 FLTKTYDLVDDRNTNHIISWSRGNNSFVVWDPQAFAMNLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------REFANEAFLRGQKHLLRNIR 316
                   9*****************************************************************99.........47****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Achn029931 317 RRKTT 321
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.107.4E-7821171IPR014710RmlC-like jelly roll fold
HamapMF_0315432.66928192IPR0274961,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, eukaryotes
SuperFamilySSF511824.3E-4429169IPR011051RmlC-like cupin domain
PfamPF030795.4E-5730170IPR004313Acireductone dioxygenase ARD family
SMARTSM004154.9E-58225318IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.6E-38225318IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-35225318IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-31229318IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-19229252IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-19267279IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340268292IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-19280292IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019509Biological ProcessL-methionine biosynthetic process from methylthioadenosine
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010309Molecular Functionacireductone dioxygenase [iron(II)-requiring] activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MYIYDGTQFP IKHEEYLKLD HDEREEVIEA WYMDDSHEDQ RLPHHREPKT FVSLDQLAEL  60
GVLSWRLDAD NYETDEQLKK IREERGYSYM DFCEVCPEKL PNYEEKIKNF FEEHLHTDEE  120
IRYCVAGSGY FDVRDHHDSW IRVWVKKGGM IVLPAGIYHR FTLDTNNYIK KSIVDKKREI  180
ALIKLRCVAN RPSFVKEEFP KLGTFYSGEP SAAVPKPLKG LHETSHPPFL TKTYDLVDDR  240
NTNHIISWSR GNNSFVVWDP QAFAMNLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRREFA  300
NEAFLRGQKH LLRNIRRRKT THMQQGLEPC VEVGRFGLDA EIYRLRHDKE VLMVELVKLR  360
QKQQSTRAYL KAMEERLRGT EMKQRQMMGF LARSMQNPIF LQQLTLQKDR RKEIEEEICR  420
KKRRAIEQGH IDFDVGVCEL GQIGGEICGF CDLEMGELVE REEEGYGSGE RVVDEGFWED  480
LLSEGIEEEI DLVAGEGEDE DVDLLAKHLG FLVSNPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vr3_A4e-602717013156Acireductone dioxygenase
5i8s_A3e-602717011441,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8t_A3e-602717011441,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8y_A3e-602717011441,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i91_A3e-602717011441,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i93_A3e-602717011441,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409423RRKEIEEEICRKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661780.21e-169PREDICTED: heat stress transcription factor A-2c-like
SwissprotQ9LUH81e-111HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2R6RUZ10.0A0A2R6RUZ1_ACTCH; Heat stress transcription factor A-6b like
STRINGLPERR03G04120.11e-180(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-96heat shock transcription factor A6B