PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn030851
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 249aa    MW: 28371.1 Da    PI: 4.9154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn030851genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+ ++k++G  +W+  ++  g+ R++k+c++rw +yl
       Achn030851 14 KGAWSPDEDRKLIAYIKRYGIWNWRVMPEAAGLLRSGKSCRLRWMNYL 61
                     79******************99**********99************97 PP
2Myb_DNA-binding54.23.3e-1768112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T eEde +++ ++++G++ W++Ia+ ++ gRt++++k++w+++l
       Achn030851  68 GNFTREEDETIIKMHEMMGNK-WAAIAAALP-GRTDNEIKNHWHTHL 112
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.319961IPR017930Myb domain
SuperFamilySSF466891.91E-2912108IPR009057Homeodomain-like
SMARTSM007172.7E-111363IPR001005SANT/Myb domain
PfamPF002492.0E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-221568IPR009057Homeodomain-like
CDDcd001676.58E-91661No hitNo description
PROSITE profilePS5129427.54462116IPR017930Myb domain
SMARTSM007175.7E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2769116IPR009057Homeodomain-like
CDDcd001674.90E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSSAQRFEKV ALKKGAWSPD EDRKLIAYIK RYGIWNWRVM PEAAGLLRSG KSCRLRWMNY  60
LRPDIKHGNF TREEDETIIK MHEMMGNKWA AIAAALPGRT DNEIKNHWHT HLKKRLTRSE  120
ASTGEVNQTN LLPELNILLP NNDPEANTTS DFGISKNQNI EANLGSESEI FGDPVGLWEE  180
SLTMENLYLE SLQEMLVDPG FVIPYCDLWC PEPMSPYGFY NDLWFNLSVS ADMESGVIEP  240
SFHFQVAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120269.12e-89transcription factor MYB4-like
TrEMBLA0A2R6RAY50.0A0A2R6RAY5_ACTCH; Myb-related protein like
STRINGXP_008224916.12e-69(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-55myb domain protein 14