PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn032521

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 176aa MW: 19487.4 Da PI: 7.3842

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn032521	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.1	3.4e-39	23	116	7	100
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lp +r da++s+vyeA+ar+rdP+yG+vg i++lq+q++ l+++lal+++e Achn032521 23 LLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPLYQRGDAVKSIVYEANARIRDPIYGCVGAISSLQHQIDVLQTQLALAQAE 116 589**************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.979	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.8E-39	23	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MLLKIITTSK SFDLNLVRDL ALLLRRRCAQ DCVFAPYFPA DEPQKFASVH KVFGASNVNK 60 MLQELPLYQR GDAVKSIVYE ANARIRDPIY GCVGAISSLQ HQIDVLQTQL ALAQAEVVHM 120 QMRQVSSSMS SNPATNSLEN GSDKAIPISQ TNKSLFNMDI MMVDQPNMGD SFWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	23	137	17	131	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	23	137	17	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882228.1	4e-80	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	7e-61	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2R6QTD0	1e-110	A0A2R6QTD0_ACTCH; LOB domain-containing protein
STRING	XP_009603165.1	7e-77	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-52	LOB domain-containing protein 4