PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn033621
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 222aa    MW: 25522.5 Da    PI: 4.2899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn033621genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14250355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                ykGVr +k +g+++AeIrdp     + +r +lg++  aeeA k ++  r+++e+
  Achn033621  2 YKGVRMRK-WGSYAAEIRDPI----QkRRLWLGTYKNAEEASKVYESKRLEFEK 50
                9*****99.**********72....35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-13162IPR001471AP2/ERF domain
PROSITE profilePS5103216.884163IPR001471AP2/ERF domain
PfamPF008472.7E-7250IPR001471AP2/ERF domain
PRINTSPR003671.2E-6213IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-13249IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-18250IPR001471AP2/ERF domain
CDDcd000189.95E-18248No hitNo description
PRINTSPR003671.2E-62440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MYKGVRMRKW GSYAAEIRDP IQKRRLWLGT YKNAEEASKV YESKRLEFEK ALLSVKNKNS  60
NFNVEHPCAL EDNSLYSPSS VLEVEDNSIT SGKEDDGLVS IVEEEQLIAR FLSDQFVLPP  120
VFEDMNLLRI NDLAQQQTLE FLGDSKHRRD FNLRFENNLS YDKNMGQFSD GLDDVTIDFS  180
TCGENYDLPN FDFELDTEEL AWVNEALNIG CPSTNLFQVF K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080544.14e-56ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2R6PD041e-161A0A2R6PD04_ACTCH; Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.12e-18ERF family protein