PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn033871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 732aa    MW: 81435.5 Da    PI: 7.4721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn033871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-07156180526
                 --SGGGGTS...--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                 lC+  +r+G   tC+y d+C+F+H+
  Achn033871 156 LCPEVSRSGdpsTCRYSDKCRFSHD 180
                 8***********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.13151181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.131151182IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4156180IPR000571Zinc finger, CCCH-type
SMARTSM0035624192217IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.798195220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.1E-58396618IPR013785Aldolase-type TIM barrel
CDDcd028014.15E-77400614No hitNo description
SuperFamilySSF513957.33E-55400692No hitNo description
PfamPF012073.1E-41436641IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360463481IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MRWPNSDNIS FLFRCFIKSP TKTLSTGRSR NLNRTVMVDV STAELAGEEP KVSDEPPSVG  60
GGNRGVAQQT SEDLVAKAIA PVKREFLRPP PIRPCGNDSK DVASEATKSA PSNLLKEKKS  120
KRQLKRERLQ KNYIQLLCNH TRCSEISQEK KSALNLCPEV SRSGDPSTCR YSDKCRFSHD  180
IEAFKDQKPA DLEGDCPFLN NEGPCPYGLT CRFSGTHKDG LLAEAFNGQK KNPEMNGLNK  240
DVQKLLWKNK MKFPKADAQL KLLGLLGPMK SKQENLSDKG EGDQTPPNGS IVADENGGCE  300
VAGDTNIKMD HSPQPPEEDD CADGTFASNE LRPPKKAKSS VDENCSLNEL DNGISILKKD  360
LEKSCSQNET GSTTDCIPSE TDRSLKSHPR EKKLIDFREK LYLAPLTTVG NLPFRRVCKV  420
LGADVTCGEM AMCTNLLQIC GAYPDTVTRT VELIDQECTV DFIDINMGCP IDIVVNKGAG  480
SALLMKPTRM KGVVQAASAI VDRPITVKVR TGYFEGRNRI DSLIEDIGQW GASAVTIHGR  540
SRQQRYSKLA DWEYIYHCTR KAPDALQVMG NGDVFSYLDW NTHKSDCPEL STCMIARGAL  600
IKPWIFTEIK EQRHWDISSG ERLNIMKDYV RFGLDHWGSD AKGVETTRHF LLEWLSYTFR  660
YIPVGLLDVI PQRLNWQPPS YFGRDDLETL MASDSAADWV RISEMLLGKV PAGFTFAPKH  720
KSNAYDRAEN G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A3e-2439765527306tRNA-dihydrouridine synthase B
6ei9_B3e-2439765527306tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076441.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2R6RBS00.0A0A2R6RBS0_ACTCH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGVIT_03s0038g00870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80391923
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]