PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn034581

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 311aa MW: 33821.7 Da PI: 8.7875

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn034581	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.9	4e-12	14	64	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w++ Achn034581 14 KQKWTSEEEAALKAGVTKYGAGKWSTILKDPEfsillYSRSNVDLKDKWRN 64 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.201	9	70	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-16	11	68	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-7	13	68	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-8	14	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-14	14	65	IPR009057	Homeodomain-like
CDD	cd11660	9.51E-20	15	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MRVIFGLLLM GAPKQKWTSE EEAALKAGVT KYGAGKWSTI LKDPEFSILL YSRSNVDLKD 60 KWRNMNVAAN GWGSRSRVRV TPKSNQQIVK DDDKALITVS QSDTEIVDAQ PLAVSNGTPE 120 NASSKKSIPS LFLDLLASPT GCIRLSSIEN SPNNLRQHPI LSSMRERYLA PENLEKLLAA 180 TLKLLTENGK LIKVKHQFRI APPSTHTDVN KGSSPLILEG KQKNSPKVEK NEIKILSKSQ 240 IDAELEKMKG MTAQEAAAAA AQAVAEAEAA IAEAEEAARE AEKAEAEAEE AQLFAEAAMK 300 ALKCRTVCTW *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028111333.1	9e-95	telomere repeat-binding factor 1-like isoform X1
Refseq	XP_028111334.1	9e-95	telomere repeat-binding factor 1-like isoform X1
Refseq	XP_028111335.1	9e-95	telomere repeat-binding factor 1-like isoform X1
Swissprot	Q8VWK4	8e-57	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A2R6QSS3	1e-139	A0A2R6QSS3_ACTCH; Single myb histone like (Fragment)
STRING	cassava4.1_012631m	3e-81	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5122	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-51	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]