PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn036551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 261aa    MW: 30804.8 Da    PI: 7.5743
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn036551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.78.8e-2519101186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ +e+++L++ar e+++++ ++k++k lWe v+ kmr++g++rs++qCk+kw+nl +ryk ++++e ++    ++++p++ +le
  Achn036551  19 QWSVHETRDLLAARAELDQTFLETKRNKVLWEVVATKMRDKGYNRSAEQCKSKWKNLVTRYKGCETMELEG---MRQQFPFYYELE 101
                 7********************************************************************97...55679**99998 PP
2Myb_DNA-binding23.51.3e-071975347
                     SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47
                      W+  E   l+ a ++l             W+ +a +m     +R+++qcks+w ++
       Achn036551 19 QWSVHETRDLLAARAELDQTfletkrnkvLWEVVATKMRdkgYNRSAEQCKSKWKNL 75
                     59999999999999999999999999999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-61678IPR001005SANT/Myb domain
CDDcd122031.76E-231883No hitNo description
Gene3DG3DSA:1.10.10.605.1E-41975IPR009057Homeodomain-like
PfamPF138371.6E-2119103No hitNo description
PROSITE profilePS500907.6542076IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEGHHRTTVG IDSADRFPQW SVHETRDLLA ARAELDQTFL ETKRNKVLWE VVATKMRDKG  60
YNRSAEQCKS KWKNLVTRYK GCETMELEGM RQQFPFYYEL EAIFAARMER MLWIEAEGGS  120
SSGTKNKGLA IASDDEEDNE ENDREKAGRS KKKKKVHKSG NSPSSSGNIS VLKEALEDLM  180
KQQMQIEMEW LKAYQAREEE RRVREMEWRQ TMEALESERI VMERRWRERE EQRTMREETR  240
AEKRDALISA LLNKLRREDM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054174.11e-110PREDICTED: trihelix transcription factor GT-3b-like isoform X1
SwissprotQ9SDW04e-64TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A2R6RXC90.0A0A2R6RXC9_ACTCH; Trihelix transcription factor GT-3b like
STRINGXP_010264622.11e-109(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.13e-53Trihelix family protein