PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn041581

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ZF-HD

Protein Properties

Length: 233aa MW: 25951.7 Da PI: 7.4388

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn041581	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.9	9.1e-32	48	104	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s+GghavDGCgEfmp+ g++gt ++l CaAC+CHR+FHR+e+e e Achn041581 48 QVRYRECKKNHAVSIGGHAVDGCGEFMPA-GDDGTLNTLICAACNCHRSFHRKEEEGE 104 79************************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.1E-29	48	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-20	50	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.7E-29	50	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.768	51	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.7E-33	157	231	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.62E-21	159	230	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.1E-26	169	225	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEFDEHEEQE EETGIQVQAN YDTAVAGNSG RPKMGGGGEA AALRRGGQVR YRECKKNHAV 60 SIGGHAVDGC GEFMPAGDDG TLNTLICAAC NCHRSFHRKE EEGEAFHRHH HHHQQQQQQL 120 SPYYRTANPA GYLHVAPPPH QRPLALPSAE REEEDMSNPS SSGGGSGSKK RFRTKFTQDQ 180 KDKMLEFAER LGWRIQKQDE AAVEQFCAET GVKRNVLKVW MHNNKHTLGK KP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-28	168	227	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028066851.1	1e-104	zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	3e-73	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2R6Q097	1e-173	A0A2R6Q097_ACTCH; Zinc-finger homeodomain protein
STRING	XP_010266504.1	1e-98	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-68	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]