PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn041671

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

M-type_MADS

Protein Properties

Length: 93aa MW: 10470.2 Da PI: 10.4697

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn041671	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeEL vLCdaeva+iifs tgkl+ey+s Achn041671 9 KKIDNITARQVTFSKRRRGLFKKAEELAVLCDAEVALIIFSATGKLFEYAS 59 68***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.941	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-29	3	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELAVLCD AEVALIIFSA TGKLFEYASS 60 SPSRIFNIHV VSIETSSITL DELRGVWIRH YG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-20	1	66	1	66	MEF2C
5f28_B	6e-20	1	66	1	66	MEF2C
5f28_C	6e-20	1	66	1	66	MEF2C
5f28_D	6e-20	1	66	1	66	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF838218	4e-95	JF838218.1 Actinidia chinensis SVP3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466792.1	7e-36	PREDICTED: MADS-box protein SVP-like isoform X6
Refseq	XP_016706671.1	1e-35	PREDICTED: MADS-box protein SVP-like isoform X4
Swissprot	Q9FUY6	3e-32	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A1U8KW70	3e-34	A0A1U8KW70_GOSHI; MADS-box protein SVP-like isoform X4
STRING	Gorai.002G142700.1	6e-35	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-34	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]