PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn042571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 369aa    MW: 41276.3 Da    PI: 8.543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn042571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09126147426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  +C  f+r G C++Gd+C FaHg
  Achn042571 126 TICAEFSR-GGCPRGDNCEFAHG 147
                 58******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.98E-5121151IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028123149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-7126149IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-7126147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.446157181IPR000571Zinc finger, CCCH-type
SMARTSM003561.6157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGSVCAEQQH KFHASNQLLL KKKSRMREID IPPRKLLGRR SAAAASEAEA FSPREESLLL  60
QKFLPYNSRG GSEDDDPYSS DHFRMYEFKV RRCTRSRSHD WTDCPFAHPG EKARRRNPRR  120
FHYSGTICAE FSRGGCPRGD NCEFAHGVFE CWLHPARYRT EACKDGKNCK RKVCFFAHSP  180
HQLRLLPPPP SDSPPSTVAA ERKYRNSSNH CCLFCPSASP TSTLMEFPVS PPMSPRSLSP  240
PISPAKPHSM NWFSPPLSRY GHQFGSGDLS YKDLLITELM SSLEGMNVNE TSHGMGGKRS  300
LSWVDVHFNN IGDDQQQFVL SPSTPSPSGS GGYFSHGDSS SSKSFIDERV HDRGLACPDF  360
GWVNDLLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058381.11e-150zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A2R6PQK20.0A0A2R6PQK2_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009789499.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.18e-76C3H family protein