PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn043381
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 168aa    MW: 19709.2 Da    PI: 8.0005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn043381genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-181668456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                + ++t++q++ Le+ F  n++++ +++ +LA++l+++ rqV vW+qN+Ra++k
  Achn043381 16 KKRLTQDQVRLLETSFTFNNKLDPDRKSQLAQQLDVPPRQVAVWYQNKRARWK 68
                5679************************************************9 PP
2HD-ZIP_I/II111.26.7e-3616105392
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  k+rl+++qv+lLE+sF+ ++kL+p+rK++la++L++ prqvavW+qn+RAR+k++ lE++y++Lk++++++ +enerLe+eve+L+++++
   Achn043381  16 KKRLTQDQVRLLETSFTFNNKLDPDRKSQLAQQLDVPPRQVAVWYQNKRARWKSQILEEEYKSLKHRLESVLKENERLEREVERLKQDMT 105
                  9*************************************************************************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6131070IPR001356Homeobox domain
SMARTSM003895.6E-161274IPR001356Homeobox domain
SuperFamilySSF466896.27E-181279IPR009057Homeodomain-like
CDDcd000869.55E-141470No hitNo description
Gene3DG3DSA:1.10.10.604.3E-191678IPR009057Homeodomain-like
PfamPF000468.2E-161768IPR001356Homeobox domain
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
PfamPF021839.6E-771103IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDYFQSQSLK HPLKCKKRLT QDQVRLLETS FTFNNKLDPD RKSQLAQQLD VPPRQVAVWY  60
QNKRARWKSQ ILEEEYKSLK HRLESVLKEN ERLEREVERL KQDMTLVCNI PSFSRSCDEV  120
GSSSLKFHGQ NHHHLDKEIY ACFNIGGEGG EFERIEGHNF FDPSISL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800499.18e-66PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2R6QA791e-121A0A2R6QA79_ACTCH; Homeobox-leucine zipper protein like
STRINGXP_009800499.13e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.13e-23homeobox protein 52