PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn043461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 133aa    MW: 14843.8 Da    PI: 9.3935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn043461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-053355123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C++ F+++  L  H++ H
  Achn043461 33 FECQYCDRLFTNSQALGGHQNAH 55
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-73060No hitNo description
Gene3DG3DSA:3.30.160.608.9E-53159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.9053360IPR007087Zinc finger, C2H2
PfamPF139128.7E-63357IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSPQFKLFGF HLSEANVNAG PQKTQPCEPN KKFECQYCDR LFTNSQALGG HQNAHKRERQ  60
RAKQAKFHAM RSSSSLPEWP AAPFGSPIYI GRPPNCVDFG PCFRSPFVGK LPEEDVDLNL  120
HLKLSPSGSN WK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, ZFP5 and the trichome initiation regulators GL1 and GL3 (PubMed:23506479). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:23506479, ECO:0000269|PubMed:24808098}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin and gibberellin. {ECO:0000269|PubMed:23506479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759677.12e-26zinc finger protein 6-like
SwissprotQ392656e-13ZFP6_ARATH; Zinc finger protein 6
TrEMBLA0A2R6PNU65e-70A0A2R6PNU6_ACTCH; Zinc finger protein
STRINGGorai.007G124800.14e-22(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.17e-14C2H2 family protein
Publications ? help Back to Top
  1. Giavalisco P, et al.
    High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome.
    Plant Mol. Biol., 2005. 57(4): p. 577-91
    [PMID:15821981]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  4. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]