PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn044651

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24217.9 Da PI: 10.7007

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn044651	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.1e-19	56	108	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ qle Le++F+++ ++ +++ +LA++lgL rqV vWFqNrRa++k Achn044651 56 KKRLTRGQLESLESCFQEEIKLEPDRKMRLARELGLAPRQVAVWFQNRRARWK 108 56799***********************************************9 PP
2	HD-ZIP_I/II	115.5	3.1e-37	56	145	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k+rl++ q+++LE++F+ee kLep+rK++lareLgl prqvavWFqnrRAR+k+kqlE y+aLkr+yd++++e+ +L++ev +L++ lk Achn044651 56 KKRLTRGQLESLESCFQEEIKLEPDRKMRLARELGLAPRQVAVWFQNRRARWKAKQLELLYDALKREYDSVSREKLKLQEEVMTLKTMLK 145 9************************************************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.74E-19	39	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.957	50	110	IPR001356	Homeobox domain
SMART	SM00389	4.2E-16	52	114	IPR001356	Homeobox domain
CDD	cd00086	2.39E-14	54	111	No hit	No description
Pfam	PF00046	1.4E-16	56	108	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-20	57	116	IPR009057	Homeodomain-like
PRINTS	PR00031	8.0E-6	81	90	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.0E-6	90	106	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.3E-7	110	144	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGKVRVAKII TRLRVGWVRV VKNTIRLRVG LDPKYPVVGP PPHTAATSSY SGERLKKRLT 60 RGQLESLESC FQEEIKLEPD RKMRLARELG LAPRQVAVWF QNRRARWKAK QLELLYDALK 120 REYDSVSREK LKLQEEVMTL KTMLKVQSKR NHVSTEISGD VTAESTSFVN RSSGRLGGTS 180 HQQMADGGYV FSVDDYNPVA VPPYWGTVLP SHP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	RRARWKAKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022747607.1	4e-71	putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2R6PXK8	1e-125	A0A2R6PXK8_ACTCH; Homeobox-leucine zipper protein like
STRING	EMJ04088	8e-68	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3869	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	3e-41	homeobox 51