PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn046381

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 652aa MW: 73526.8 Da PI: 6.8049

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn046381	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	45.6	1.4e-14	265	312	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i ed+ y +l+ dAA+ L+v+ ++ Kr CR+yGI+RWP R + ++ Achn046381 265 IPYEDILCYSKLSRCDAARYLQVSISTFKRVCRKYGISRWPPRNVDKV 312 66788899999999******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.162	248	332	IPR003035	RWP-RK domain
Pfam	PF02042	4.8E-12	267	312	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.93E-9	349	442	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-8	352	419	No hit	No description
Pfam	PF00564	5.2E-10	356	418	IPR000270	PB1 domain
SMART	SM00666	5.6E-5	356	440	IPR000270	PB1 domain
PROSITE profile	PS51745	15.651	356	440	IPR000270	PB1 domain
PROSITE profile	PS50802	8.591	467	600	IPR003323	OTU domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MAVILKQEMN NNNAHQYAFL EIRWVLDRVR GIYKLPLALT WVPCGACKAL LLVEDGGMLK 60 DCDGLITDLH KFTSGRLGHH LRNGIGAVGR VLSSPNLLYC SDVTQLSMVE YPLAHFAREC 120 RLRGCFAISL RSNYTGNDVY VLEIFMPTNN KDEDPLSSLS KILETMKEFK IFTLASGEVL 180 GKELSVEVIE FQNGQKHHVQ TLNVTGSLLS LEPLQNGGEI VQVDSSDHQS SDAEQCEIDG 240 NHPQELGTKK TSGREHKNTG VRIDIPYEDI LCYSKLSRCD AARYLQVSIS TFKRVCRKYG 300 ISRWPPRNVD KVHPPRPSHV DHQEVTQLNS NLPSNQASAS IAHTQPHDTV MQNANTVNVK 360 AKYVKGLTVL FPLLLSSTLE ELYECIETRL HLSRATYHAC YIDGDNDKIT ITCDQDLQFW 420 LCNSPRLPGS NAVVLHIDPI SQAYHTKSVT PLPYIDWFPA SLRPYILHVK DVALDGNCGF 480 RAIAGLMGIG EDGWVQVRRD LLTELNSHVD DYKIMYGQQR INELTHCLSW FDGHSGMDRW 540 MTMPDMGHLI ASYYNVVLYL LSHQQCLTFL PLRSVPIPAA SRREIAIGFM NNHFVEVFLL 600 SGHPVPPVAS SWTRYRSQCA QGWETTYNRR IQHFRELVDY NVTTTDAISL D*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MAVILKQEMN NNNAHQYAFL EIRWVLDRVR GIYKLPLALT WVPCGACKAL LLVEDGGMLK  60
DCDGLITDLH KFTSGRLGHH LRNGIGAVGR VLSSPNLLYC SDVTQLSMVE YPLAHFAREC  120
RLRGCFAISL RSNYTGNDVY VLEIFMPTNN KDEDPLSSLS KILETMKEFK IFTLASGEVL  180
GKELSVEVIE FQNGQKHHVQ TLNVTGSLLS LEPLQNGGEI VQVDSSDHQS SDAEQCEIDG  240
NHPQELGTKK TSGREHKNTG VRIDIPYEDI LCYSKLSRCD AARYLQVSIS TFKRVCRKYG  300
ISRWPPRNVD KVHPPRPSHV DHQEVTQLNS NLPSNQASAS IAHTQPHDTV MQNANTVNVK  360
AKYVKGLTVL FPLLLSSTLE ELYECIETRL HLSRATYHAC YIDGDNDKIT ITCDQDLQFW  420
LCNSPRLPGS NAVVLHIDPI SQAYHTKSVT PLPYIDWFPA SLRPYILHVK DVALDGNCGF  480
RAIAGLMGIG EDGWVQVRRD LLTELNSHVD DYKIMYGQQR INELTHCLSW FDGHSGMDRW  540
MTMPDMGHLI ASYYNVVLYL LSHQQCLTFL PLRSVPIPAA SRREIAIGFM NNHFVEVFLL  600
SGHPVPPVAS SWTRYRSQCA QGWETTYNRR IQHFRELVDY NVTTTDAISL D*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6QMR8	0.0	A0A2R6QMR8_ACTCH; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	3e-38	Nin-like family protein