PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn046891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26803.8 Da    PI: 5.0931
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn046891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.4e-203286256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++R +f++eq++ Le+ Fe++ ++ a+++ +LA +lgL+ rqV +WFqNrRa++k
  Achn046891 32 KNRKKFSDEQIRSLESIFESETKLEARKKVQLAWELGLQPRQVAIWFQNRRARWK 86
                89****************************************************9 PP
2HD-ZIP_I/II114.56.4e-3733124293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +++++s+eq+++LE+ Fe+e+kLe ++Kv+la eLglqprqva+WFqnrRAR+k+k++E+ y++Lk++yd+l+++ e+L+ke+++L  +++e
   Achn046891  33 NRKKFSDEQIRSLESIFESETKLEARKKVQLAWELGLQPRQVAIWFQNRRARWKSKKIEQSYRVLKANYDNLHSQFEALKKEKQSLLIQVQE 124
                  6799**********************************************************************************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-201389IPR009057Homeodomain-like
SuperFamilySSF466896.42E-202189IPR009057Homeodomain-like
PROSITE profilePS5007118.4952888IPR001356Homeobox domain
SMARTSM003892.8E-163092IPR001356Homeobox domain
PfamPF000462.5E-173286IPR001356Homeobox domain
CDDcd000861.07E-143789No hitNo description
PRINTSPR000312.5E-55968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000312.5E-56884IPR000047Helix-turn-helix motif
PfamPF021834.4E-1488129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEGEVYSALS LPAEAAEFES EETPNPKKKK NKNRKKFSDE QIRSLESIFE SETKLEARKK  60
VQLAWELGLQ PRQVAIWFQN RRARWKSKKI EQSYRVLKAN YDNLHSQFEA LKKEKQSLLI  120
QVQELSDLLE QNHDQGSRSK DLGGDSTPGG SDGGDTHCDL KTKPSCLKQC SDRAVTYSDD  180
DELGNAEPFP LEKAEILNTG AQVYGSLILP EKWCSFDSSG PLDQTCGNSN WWDIWT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028054999.13e-81homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2R6QPT31e-172A0A2R6QPT3_ACTCH; Homeobox-leucine zipper protein like
STRINGXP_010251668.12e-67(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-42homeobox 7