PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn049821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92686.3 Da    PI: 6.3466
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn049821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Achn049821 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                5679*****************************************************97 PP
2START167.87.6e-531603742205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT....EEEEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg....galqlmva 96 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++     +l +m+ 
  Achn049821 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAnggtIELLYMQV 257
                 7899******************************************************.8888888888*****************9996633333333 PP

                 X....XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
       START  97 e....lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                      l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p     +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l++s
  Achn049821 258 VlvfmLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLSNTQNGPAvppVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYES 356
                 222225789***********************************99988899*********************************************** PP

                 HHHHHHHHHHHHTXXXXX CS
       START 188 glaegaktwvatlqrqce 205
                 +++ ++kt++a+l+++++
  Achn049821 357 STVLAQKTTMAALRQLRQ 374
                 **************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4831175IPR001356Homeobox domain
SMARTSM003891.2E-151379IPR001356Homeobox domain
SuperFamilySSF466895.56E-171679IPR009057Homeodomain-like
CDDcd000869.40E-171676No hitNo description
PfamPF000463.0E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181874IPR009057Homeodomain-like
CDDcd146861.15E-668107No hitNo description
PROSITE profilePS5084825.437150371IPR002913START domain
CDDcd088757.83E-77154376No hitNo description
SMARTSM002346.1E-39159375IPR002913START domain
SuperFamilySSF559615.49E-35159377No hitNo description
Gene3DG3DSA:3.30.530.205.1E-22159372IPR023393START-like domain
PfamPF018522.4E-50160374IPR002913START domain
PfamPF086702.3E-52700842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAMSCKDGKG VMDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSHLV YENGYFRQHT  120
QNTTLATKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF RDCRAVDVLN  240
VLPTANGGTI ELLYMQVVLV FMLYAPTTLA PARDFWLLRY TSVMEDGSLV VCERSLSNTQ  300
NGPAVPPVQN FVRAEMLPSG YLIRPCEGGG SIIHIVDHMN LEAWSVPEVL RPLYESSTVL  360
AQKTTMAALR QLRQIAQEVS QSNVTNWGRR PAALRALSQR LSRGFNEAVN GFTDEGWSMM  420
GNDGMDDVTI LVNSSPDKLM GLNLTFANGF PAVSNAVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADNNI DAYSAAAVKV GPCSLPGARV GSFGGQVILP LAHTIEHEEL LEVIKLEGVA  540
HCPEDAIMPR DMFLLQLCSG MDENAIGTCA ELIFAPIDAS FADDAPLLPS GFRIIPLDSG  600
KEASSPNRTL DLASALEIGP SGNKSSNDYT ANSGSTRSVM TIAFEFAFES HMQENVASMA  660
RQYVRSIISS VQRVALALSP SNLSSHGGLR TPLGTPEANT LARWICHSYR CFLGVELLTS  720
GSEGSETTLK TLWHHTDAIM CCSLKALPVF TFANQAGLDM LETTLVALQD ITLEKIFDDH  780
GRKTLCSEFP QIMQQGFACL QGGICLSSMG RPVSYERAVA WKVLNEEENA HCICFMFMNW  840
SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058078.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2R6R0060.0A0A2R6R006_ACTCH; Homeobox-leucine zipper protein like
STRINGVIT_09s0002g03740.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]