PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn050221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 189aa    MW: 21399.8 Da    PI: 6.0281
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn050221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.5e-11243846
                     HHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  8 EdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                     Ed++l d++k +G g     +k+ ar+++ gRt++++k++w++
       Achn050221  2 EDKILRDYIKVHGEGkwrnLPKKAARRLP-GRTDNEIKNYWNT 43
                     9**************66666667777777.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4149IPR017930Myb domain
PfamPF002499.9E-8243IPR001005SANT/Myb domain
CDDcd001672.38E-10245No hitNo description
SuperFamilySSF466891.87E-8248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-14244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEDKILRDYI KVHGEGKWRN LPKKAARRLP GRTDNEIKNY WNTNIGKKVQ AHTSSTSNHK  60
PSNHFPKENN NHEPSPKTES RVIRTKASRC TRGFITPEPQ NGPLPVNESP PFVSIEDDSS  120
NFVIDFEMDE KFLSDFLNTT DFAALREFEN GVIKGDTETN PSPSCTNYDQ TLLFSDEVLP  180
GMDWLCGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028089226.11e-45myb-related protein 308-like
TrEMBLA0A2R6R0D21e-126A0A2R6R0D2_ACTCH; Transcription factor like
STRINGEOY272331e-39(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-15MYB family protein