PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn050401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 539aa    MW: 59770.9 Da    PI: 6.3489
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn050401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA42.12.9e-13187222137
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                 dep+YVNaKQy++Il+RRq Rakle++++l +ksrk+
  Achn050401 187 DEPIYVNAKQYHAILRRRQYRAKLEAQNRL-SKSRKR 222
                 79****************************.777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-18185233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.893186222IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.4E-9188230IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860191211IPR018362CCAAT-binding factor, conserved site
PfamPF121651.4E-54312430IPR021998Alfin
SuperFamilySSF579035.98E-17474535IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-17477535IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.517482534IPR019787Zinc finger, PHD-finger
SMARTSM002493.2E-9484532IPR001965Zinc finger, PHD-type
CDDcd156137.59E-32484534No hitNo description
PfamPF006284.6E-10485533IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590485531IPR019786Zinc finger, PHD-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQDLCKKDSE LSSTSTHSMT PRVTGGAPWL TSTALQIEST LSKSLSLKMV TPNQQGHNTK  60
QIGFQFQDQD SASTQSTGQS YHEVANLGES NGCGQSIISM QSGYNGIHGK PEVDQIKSAL  120
SMGTQDSALQ PAQIDYRQSF ACIPLSYTDP YYSGLLAAYG PHAMIHHPQM LEMASARVPL  180
PLDLPQDEPI YVNAKQYHAI LRRRQYRAKL EAQNRLSKSR KRARGSGGRF LNTKELQECK  240
INAATNGQDK SGSTQFHLAT ATMSESEVHM PENYKEGAST TSCSDITSVS NSDSIFKQQE  300
FRFSLYPTTC VVEEVFGDFK GRRAGMIKAL TSDVEEFYQQ CDPGFPSEQW EVNLPAEEVP  360
PELPEPALGI NFARDGMQEK DWLSLVAVHS DAWLLSVAFY FGARFGFDKA DRKRLFNMIN  420
DLPTVFEVVT GAAKKQQKDK SSVSNHSSNK SKPISKAGKL PKSQPKDEEE GLDEEDEDEH  480
GETLCGACGE NYASDEFWIC CDICEKWFHG KCVKITPARA EHIKQYKCPT CSNKRARP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xvj_A8e-573124336135PHD finger protein ALFIN-LIKE 7
5xvj_B8e-573124336135PHD finger protein ALFIN-LIKE 7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096711.11e-150nuclear transcription factor Y subunit A-3-like
RefseqXP_028096712.11e-150nuclear transcription factor Y subunit A-3-like
TrEMBLA0A2R6R0G10.0A0A2R6R0G1_ACTCH; Nuclear transcription factor Y subunit A-3 like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-47nuclear factor Y, subunit A3