PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn050501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 466aa    MW: 50886.3 Da    PI: 9.6188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn050501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-057395123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C +C+k F r  nL+ H r H
  Achn050501 73 FVCDICNKGFQRDQNLQLHRRGH 95
                89*******************88 PP
2zf-C2H212.90.00034149171123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k++  +s+ k H +t+
  Achn050501 149 WKCDKCSKRYAVQSDWKAHSKTC 171
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.57E-77295No hitNo description
SMARTSM003550.0217395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8877395IPR007087Zinc finger, C2H2
PfamPF121718.1E-57396IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355210114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.57E-7144169No hitNo description
SMARTSM00355140149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSNLTSASGE ASISSTNRAE TSSIFPHQQR YFAPTTQTQQ VVVKKKRNLP GNPDPEAEVI  60
ALSPKTLLAT NRFVCDICNK GFQRDQNLQL HRRGHKLPWK LKQRTSKEVR KKVYVCPEPS  120
CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESARAITG NPLLASQSNT SVPHINLQSQ TQIQFNTHDL  240
QSFPMKKEQQ QNFINPPWLG PPPPIDLSHS ILPFHDRNQP ISPNPNPSPS LGPTIHPYQP  300
IASPHMSATA LLQKAAQMGA TMSSSKTEAE PAMVRAHQGH VPADSATFGL HLSPREEMGS  360
GFLSVFGNKA AAAASTGVST GTTAAAGGAP PPSLLQEMLS LSSFGDGGSF HDSLSRRSDH  420
EGGMTRDLLG LRPLSHSDIL SITGLSTHIS TNQVNQNQSQ ESWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35145206364Zinc finger protein JACKDAW
5b3h_F4e-35145206364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199111KLKQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-126AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242234.10.0PREDICTED: protein indeterminate-domain 7-like isoform X1
SwissprotQ9LRW71e-132IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A2R6R0D90.0A0A2R6R0D9_ACTCH; Protein indeterminate-domain like
STRINGXP_010242234.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-125indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]