PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn051551

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 172aa MW: 18748.4 Da PI: 8.6031

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn051551	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.4	7.1e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lp ++r da++s+vyeA+ar+rdPvyG+vg i++lq+q++ l+++lal+++ Achn051551 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPVHQRGDAVKSMVYEANARVRDPVYGCVGAISSLQHQIDILQTQLALAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e Achn051551 112 E 112 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.559	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKEGGRKQGA ATPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE 60 LPVHQRGDAV KSMVYEANAR VRDPVYGCVG AISSLQHQID ILQTQLALAQ AEVVHMRMRQ 120 GPSSTFTNPA TGSPENGSYR AIPISQTNKS FFNMDIMVVD QPNTGESLWS C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-49	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-49	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882228.1	2e-95	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	2e-75	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2R6QBR8	1e-126	A0A2R6QBR8_ACTCH; LOB domain-containing protein
STRING	VIT_19s0027g01120.t01	9e-91	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	9e-78	LOB domain-containing protein 4