PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn052711

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 192aa MW: 21021 Da PI: 8.0695

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn052711	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sFs+ L H +H Achn052711 43 YECKTCNRSFSSFQALGGHRASH 65 99**********99999998887 PP
2	zf-C2H2	15.1	6.4e-05	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs+ L H+r+H Achn052711 109 HECSICDTEFSSGQALGGHMRRH 131 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.25E-9	42	65	No hit	No description
Pfam	PF13912	6.9E-13	42	67	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.072	43	65	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.157	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.25E-9	104	131	No hit	No description
Pfam	PF13912	5.9E-12	109	133	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	109	131	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	109	136	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	111	131	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MANCLILLAQ GLSPPPAEAD EGKIVKFTSR RIAAAGKSGF YVYECKTCNR SFSSFQALGG 60 HRASHKRPKT EAKPPIPPPP QTDVEEKCEL TKIPPPLPLP IAPRPNKIHE CSICDTEFSS 120 GQALGGHMRR HRSAPTPRTA ASFESDDHDE KKRIILPLDL NLPAPLDQDD LPKDSKYQFV 180 FNGPALVDCH Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274374.1	1e-63	PREDICTED: zinc finger protein ZAT5
Swissprot	Q681X4	2e-49	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A2R6PEV2	1e-136	A0A2R6PEV2_ACTCH; Zinc finger protein
STRING	VIT_06s0061g00760.t01	3e-63	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-37	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]