PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn053001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 492aa    MW: 53643.6 Da    PI: 6.4029
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn053001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31212269260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkg+ef+rsYYrCt+++Cp+k++ver   d+++++++Y g+H+h+k
  Achn053001 212 EDGYNWRKYGQKLVKGNEFTRSYYRCTHPNCPAKRQVERLL-DGQITDTIYLGKHEHPK 269
                 7****************************************.***************85 PP
2WRKY103.98.7e-33387445159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++d kvv++tYeg+H+h+
  Achn053001 387 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNAGCPVKKHVERASHDLKVVITTYEGQHDHD 445
                 58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26202270IPR003657WRKY domain
PROSITE profilePS5081122.343206270IPR003657WRKY domain
SuperFamilySSF1182901.06E-24210270IPR003657WRKY domain
SMARTSM007746.7E-35211269IPR003657WRKY domain
PfamPF031062.2E-24212268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-36374447IPR003657WRKY domain
SuperFamilySSF1182901.02E-28379447IPR003657WRKY domain
PROSITE profilePS5081135.622382447IPR003657WRKY domain
SMARTSM007741.5E-37387446IPR003657WRKY domain
PfamPF031065.4E-26388444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVTLGEVVQD AVASDKSQHR DSPDHESQSN QEGSTLSVLA DEGPGGLHKT QSANSKVSAS  60
KCNEEGNTLS MITEEVSDNV QVRQGSDITS REQTAQSDEN SPSVIPIRES HNLQQSQSPS  120
SIIGDHFSQA NQEGTSLSKI PAQDSDNLQE RHGSDIVLHA SESIKKESSL SAIPEKVPDI  180
LQLTQTPNTG SHLLHRDQEG KNSSRTPDKA SEDGYNWRKY GQKLVKGNEF TRSYYRCTHP  240
NCPAKRQVER LLDGQITDTI YLGKHEHPKP QPSAQISVSF VQPIQAIRPE ETSLDTGQGK  300
ACNAHGLASH HAKPAESPKL STIAPNDDAV EGASSLSNRT NDEVDHSADP DSKRQKKDIT  360
NISEIAVEKP NGDPRVVVQT TSEVDIVNDG YRWRKYGQKL VKGNPNPRSY YRCSNAGCPV  420
KKHVERASHD LKVVITTYEG QHDHDKPPAR TVTHNAAGAD SNITTHNSES RSRPEESRAL  480
GLEMAVHTSA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-36213449276WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051846.10.0WRKY transcription factor 1-like isoform X1
TrEMBLA0A2R6QCV40.0A0A2R6QCV4_ACTCH; WRKY transcription factor 20
STRINGVIT_12s0057g00550.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.24e-86zinc-dependent activator protein-1